RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 CABLES1Q8TDN4 633 aa13.64□□□□□ -0.23
LINC00661-204ENST00000549354 SIRT2Q8IXJ6 389 aa13.63□□□□□ -0.23
LINC00661-204ENST00000549354 VSIG10Q8N0Z9 540 aa13.63□□□□□ -0.23
LINC00661-204ENST00000549354 SCN11AQ9UI33 1791 aa13.63□□□□□ -0.23
LINC00661-204ENST00000549354 C1orf141Q5JVX7 400 aa13.62□□□□□ -0.23
LINC00661-204ENST00000549354 KIF2CQ99661 725 aa13.62□□□□□ -0.23
LINC00661-204ENST00000549354 CHMP4AQ9BY43 222 aa13.62□□□□□ -0.23
LINC00661-204ENST00000549354 CAVIN1Q6NZI2 390 aaKnown RBP13.62□□□□□ -0.23
LINC00661-204ENST00000549354 MEIS3Q99687 375 aa13.62□□□□□ -0.23
LINC00661-204ENST00000549354 RBM27Q9P2N5 1060 aaKnown RBP13.62□□□□□ -0.23
LINC00661-204ENST00000549354 PXDNLA1KZ92 1463 aa13.62□□□□□ -0.23
LINC00661-204ENST00000549354 MEGF6O75095 1541 aa13.62□□□□□ -0.23
LINC00661-204ENST00000549354 G2E3Q7L622 706 aa13.62□□□□□ -0.23
LINC00661-204ENST00000549354 GDPD2Q9HCC8 539 aa13.62□□□□□ -0.23
LINC00661-204ENST00000549354 MRC1P22897 1456 aa13.61□□□□□ -0.23
LINC00661-204ENST00000549354 EIF2S2P20042 333 aaKnown RBP13.61□□□□□ -0.23
LINC00661-204ENST00000549354 CLCN1P35523 988 aa13.61□□□□□ -0.23
LINC00661-204ENST00000549354 HSP90AA2PQ14568 343 aaPredicted RBP13.61□□□□□ -0.23
LINC00661-204ENST00000549354 ZGPATQ8N5A5 531 aaKnown RBP13.61□□□□□ -0.23
LINC00661-204ENST00000549354 K7ELQ4 463 aaPredicted RBP13.61□□□□□ -0.23
LINC00661-204ENST00000549354 GCC1Q96CN9 775 aa13.61□□□□□ -0.23
LINC00661-204ENST00000549354 STK31Q9BXU1 1019 aa13.61□□□□□ -0.23
LINC00661-204ENST00000549354 IL1RAPL2Q9NP60 686 aa13.61□□□□□ -0.23
LINC00661-204ENST00000549354 CCDC9Q9Y3X0 531 aaKnown RBP13.61□□□□□ -0.23
LINC00661-204ENST00000549354 ANXA1P04083 346 aa13.6□□□□□ -0.23
LINC00661-204ENST00000549354 RBM25P49756 843 aaKnown RBP13.6□□□□□ -0.23
LINC00661-204ENST00000549354 CCT4P50991 539 aaKnown RBP13.6□□□□□ -0.23
LINC00661-204ENST00000549354 MPRIPQ6WCQ1 1025 aa13.6□□□□□ -0.23
LINC00661-204ENST00000549354 RAPGEF4Q8WZA2 1011 aa13.6□□□□□ -0.23
LINC00661-204ENST00000549354 ATP10DQ9P241 1426 aa13.6□□□□□ -0.23
LINC00661-204ENST00000549354 TATP17735 454 aaPredicted RBP13.6□□□□□ -0.23
LINC00661-204ENST00000549354 TEFQ10587 303 aa13.6□□□□□ -0.23
LINC00661-204ENST00000549354 UPF3BQ9BZI7 483 aaKnown RBP13.6□□□□□ -0.23
LINC00661-204ENST00000549354 NLRP2Q9NX02 1062 aa13.6□□□□□ -0.23
LINC00661-204ENST00000549354 PARP4Q9UKK3 1724 aaKnown RBP13.6□□□□□ -0.23
LINC00661-204ENST00000549354 SPG7Q9UQ90 795 aa13.59□□□□□ -0.23
LINC00661-204ENST00000549354 KDM6AO15550 1401 aaPredicted RBP13.59□□□□□ -0.23
LINC00661-204ENST00000549354 BTBD11A6QL63 1104 aa13.59□□□□□ -0.23
LINC00661-204ENST00000549354 PRPF40AO75400 957 aaKnown RBP13.59□□□□□ -0.23
LINC00661-204ENST00000549354 FLIIQ13045 1269 aa13.59□□□□□ -0.23
LINC00661-204ENST00000549354 BMP2KLQ5H9B9 411 aa13.59□□□□□ -0.23
LINC00661-204ENST00000549354 COL5A2P05997 1499 aaPredicted RBP13.59□□□□□ -0.23
LINC00661-204ENST00000549354 PHKG2P15735 406 aa13.59□□□□□ -0.23
LINC00661-204ENST00000549354 RAB3GAP1Q15042 981 aa13.59□□□□□ -0.23
LINC00661-204ENST00000549354 CHRNA2Q15822 529 aa13.59□□□□□ -0.23
LINC00661-204ENST00000549354 LTBP4Q8N2S1 1624 aa13.58□□□□□ -0.23
LINC00661-204ENST00000549354 WDR17Q8IZU2 1322 aa13.58□□□□□ -0.24
LINC00661-204ENST00000549354 NASPP49321 788 aaPredicted RBP13.58□□□□□ -0.24
LINC00661-204ENST00000549354 RPAP2Q8IXW5 612 aaPredicted RBP13.58□□□□□ -0.24
LINC00661-204ENST00000549354 ANKRD44Q8N8A2 993 aa13.58□□□□□ -0.24
LINC00661-204ENST00000549354 CHMP3Q9Y3E7 222 aa13.58□□□□□ -0.24
LINC00661-204ENST00000549354 AHDC1Q5TGY3 1603 aaPredicted RBP13.58□□□□□ -0.24
LINC00661-204ENST00000549354 GOLGA6L22H0YM25 854 aa13.57□□□□□ -0.24
LINC00661-204ENST00000549354 GSPT1P15170 499 aaKnown RBP13.57□□□□□ -0.24
LINC00661-204ENST00000549354 KCNQ3O43525 872 aa13.57□□□□□ -0.24
LINC00661-204ENST00000549354 AK9Q5TCS8 1911 aa13.57□□□□□ -0.24
LINC00661-204ENST00000549354 HDGFL1Q5TGJ6 251 aa13.57□□□□□ -0.24
LINC00661-204ENST00000549354 COL22A1Q8NFW1 1626 aaPredicted RBP13.57□□□□□ -0.24
LINC00661-204ENST00000549354 RBM10P98175 930 aaKnown RBP13.56□□□□□ -0.24
LINC00661-204ENST00000549354 FKBP5Q13451 457 aaPredicted RBP13.56□□□□□ -0.24
LINC00661-204ENST00000549354 IFNL2Q8IZJ0 200 aa13.56□□□□□ -0.24
LINC00661-204ENST00000549354 ANP32BQ92688 251 aaKnown RBP13.56□□□□□ -0.24
LINC00661-204ENST00000549354 DCTPP1Q9H773 170 aa13.56□□□□□ -0.24
LINC00661-204ENST00000549354 BAG4O95429 457 aaKnown RBP13.56□□□□□ -0.24
LINC00661-204ENST00000549354 SNX21Q969T3 373 aa13.56□□□□□ -0.24
LINC00661-204ENST00000549354 SLC52A2Q9HAB3 445 aa13.56□□□□□ -0.24
LINC00661-204ENST00000549354 ANO2Q9NQ90 1003 aa13.56□□□□□ -0.24
LINC00661-204ENST00000549354 GIGYF1O75420 1035 aaPredicted RBP13.55□□□□□ -0.24
LINC00661-204ENST00000549354 NEK4P51957 841 aa13.55□□□□□ -0.24
LINC00661-204ENST00000549354 CDC45O75419 566 aa13.55□□□□□ -0.24
LINC00661-204ENST00000549354 CSB-PGBD3P0DP91 1061 aa13.55□□□□□ -0.24
LINC00661-204ENST00000549354 DDIT3P35638 169 aa13.55□□□□□ -0.24
LINC00661-204ENST00000549354 CEP85Q6P2H3 762 aa13.55□□□□□ -0.24
LINC00661-204ENST00000549354 PRDM11Q9NQV5 511 aa13.55□□□□□ -0.24
LINC00661-204ENST00000549354 DCAF5Q96JK2 942 aa13.54□□□□□ -0.24
LINC00661-204ENST00000549354 CYP27B1O15528 508 aa13.54□□□□□ -0.24
LINC00661-204ENST00000549354 CARD10Q9BWT7 1032 aa13.54□□□□□ -0.24
LINC00661-204ENST00000549354 PLEKHM2Q8IWE5 1019 aa13.54□□□□□ -0.24
LINC00661-204ENST00000549354 SDSP20132 328 aa13.53□□□□□ -0.24
LINC00661-204ENST00000549354 NUTM1Q86Y26 1132 aa13.53□□□□□ -0.24
LINC00661-204ENST00000549354 ROBO1Q9Y6N7 1651 aa13.53□□□□□ -0.24
LINC00661-204ENST00000549354 IBTKQ9P2D0 1353 aaPredicted RBP13.53□□□□□ -0.24
LINC00661-204ENST00000549354 KIAA1211Q6ZU35 1233 aa13.52□□□□□ -0.24
LINC00661-204ENST00000549354 SHANK3Q9BYB0 1731 aa13.52□□□□□ -0.24
LINC00661-204ENST00000549354 NKX1-1Q15270 411 aaPredicted RBP13.52□□□□□ -0.24
LINC00661-204ENST00000549354 PPFIA3O75145 1194 aa13.52□□□□□ -0.25
LINC00661-204ENST00000549354 DBF4Q9UBU7 674 aaPredicted RBP13.52□□□□□ -0.25
LINC00661-204ENST00000549354 GNAI3P08754 354 aa13.51□□□□□ -0.25
LINC00661-204ENST00000549354 ZNF790Q6PG37 636 aa13.51□□□□□ -0.25
LINC00661-204ENST00000549354 PHAXQ9H814 394 aaKnown RBP13.51□□□□□ -0.25
LINC00661-204ENST00000549354 CHPF2Q9P2E5 772 aa13.51□□□□□ -0.25
LINC00661-204ENST00000549354 GLI3P10071 1580 aa13.51□□□□□ -0.25
LINC00661-204ENST00000549354 MSNP26038 577 aaKnown RBP13.51□□□□□ -0.25
LINC00661-204ENST00000549354 COL14A1Q05707 1796 aaKnown RBP13.51□□□□□ -0.25
LINC00661-204ENST00000549354 SKOR2Q2VWA4 1001 aaPredicted RBP13.51□□□□□ -0.25
LINC00661-204ENST00000549354 C5P01031 1676 aa13.5□□□□□ -0.25
LINC00661-204ENST00000549354 CPA1P15085 419 aa13.5□□□□□ -0.25
LINC00661-204ENST00000549354 CIZ1Q9ULV3 898 aaPredicted RBP13.5□□□□□ -0.25
LINC00661-204ENST00000549354 GNAI2P04899 355 aa13.5□□□□□ -0.25
LINC00661-204ENST00000549354 PRIM1P49642 420 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms