RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PDE1AP54750 535 aa16.75■□□□□ 0.27
LIMS1-215ENST00000544547 SRCIN1Q9C0H9 1055 aa16.75■□□□□ 0.27
LIMS1-215ENST00000544547 POLKQ9UBT6 870 aa16.75■□□□□ 0.27
LIMS1-215ENST00000544547 H0YHG0 523 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 BLOC1S2Q6QNY1 142 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 MRPL50Q8N5N7 158 aaKnown RBP16.74■□□□□ 0.27
LIMS1-215ENST00000544547 TCEANC2Q96MN5 208 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 CCDC61Q9Y6R9 512 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 IL16Q14005 1332 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 G3BP1Q13283 466 aaKnown RBP eCLIP16.74■□□□□ 0.27
LIMS1-215ENST00000544547 CCT4P50991 539 aaKnown RBP16.74■□□□□ 0.27
LIMS1-215ENST00000544547 TSPYL1Q9H0U9 437 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 A0A1W2PP64 1363 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 SRGAP3O43295 1099 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 SNW1Q13573 536 aaKnown RBP16.74■□□□□ 0.27
LIMS1-215ENST00000544547 CCDC102AQ96A19 550 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 ESYT1Q9BSJ8 1104 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 PPP6R1Q9UPN7 881 aa16.74■□□□□ 0.27
LIMS1-215ENST00000544547 C10orf67Q8IYJ2 551 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 STK11IPQ8N1F8 1099 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 ZNF397Q8NF99 534 aaPredicted RBP16.73■□□□□ 0.27
LIMS1-215ENST00000544547 ZSWIM4Q9H7M6 989 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 MARCH6O60337 910 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 PTPRTO14522 1441 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 TYRO3Q06418 890 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 STK38Q15208 465 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 CPLX2Q6PUV4 134 aaKnown RBP16.73■□□□□ 0.27
LIMS1-215ENST00000544547 DEF6Q9H4E7 631 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 DCTPP1Q9H773 170 aa16.73■□□□□ 0.27
LIMS1-215ENST00000544547 ZSCAN31Q96LW9 406 aaPredicted RBP16.72■□□□□ 0.27
LIMS1-215ENST00000544547 SCAND2PQ9GZW5 306 aaPredicted RBP16.72■□□□□ 0.27
LIMS1-215ENST00000544547 PYCARDQ9ULZ3 195 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 NSD2O96028 1365 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 CPA1P15085 419 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 LRMPQ12912 555 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 F13A1P00488 732 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 GSPT1P15170 499 aaKnown RBP16.72■□□□□ 0.27
LIMS1-215ENST00000544547 FAM173BQ6P4H8 233 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 SLC26A8Q96RN1 970 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 RAB11FIP3O75154 756 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 DDX58O95786 925 aaKnown RBP16.72■□□□□ 0.27
LIMS1-215ENST00000544547 CCDC30Q5VVM6 783 aa16.72■□□□□ 0.27
LIMS1-215ENST00000544547 SYTL4Q96C24 671 aaPredicted RBP16.72■□□□□ 0.27
LIMS1-215ENST00000544547 CD109Q6YHK3 1445 aa16.71■□□□□ 0.27
LIMS1-215ENST00000544547 AIMP1Q12904 312 aaKnown RBP16.71■□□□□ 0.27
LIMS1-215ENST00000544547 HSP90AB4PQ58FF6 505 aa16.71■□□□□ 0.27
LIMS1-215ENST00000544547 NCKAP5LQ9HCH0 1330 aa16.71■□□□□ 0.27
LIMS1-215ENST00000544547 ZBTB22O15209 634 aa16.71■□□□□ 0.27
LIMS1-215ENST00000544547 SYT1P21579 422 aa16.71■□□□□ 0.27
LIMS1-215ENST00000544547 BIN1O00499 593 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 SLU7O95391 586 aaKnown RBP16.7■□□□□ 0.26
LIMS1-215ENST00000544547 IRX3P78415 501 aaPredicted RBP16.7■□□□□ 0.26
LIMS1-215ENST00000544547 ELF2Q15723 593 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 ANKRD44Q8N8A2 993 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 SAMD9LQ8IVG5 1584 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 BRPF1P55201 1214 aaPredicted RBP16.7■□□□□ 0.26
LIMS1-215ENST00000544547 AKAP17AQ02040 695 aaKnown RBP16.7■□□□□ 0.26
LIMS1-215ENST00000544547 GUCY1B3Q02153 619 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 AXDND1Q5T1B0 1012 aaPredicted RBP16.7■□□□□ 0.26
LIMS1-215ENST00000544547 HDGFL1Q5TGJ6 251 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 TMC6Q7Z403 805 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 CERS3Q8IU89 383 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 ZNF692Q9BU19 519 aaPredicted RBP16.7■□□□□ 0.26
LIMS1-215ENST00000544547 MAST1Q9Y2H9 1570 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 KIF2AO00139 706 aaPredicted RBP16.7■□□□□ 0.26
LIMS1-215ENST00000544547 ACBD3Q9H3P7 528 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 TPM1P09493 284 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 LRRFIP1Q32MZ4 808 aaKnown RBP16.7■□□□□ 0.26
LIMS1-215ENST00000544547 CFAP100Q494V2 611 aa16.7■□□□□ 0.26
LIMS1-215ENST00000544547 PATL2C9JE40 543 aaKnown RBP16.69■□□□□ 0.26
LIMS1-215ENST00000544547 IBSPP21815 317 aaPredicted RBP16.69■□□□□ 0.26
LIMS1-215ENST00000544547 GABPB1Q06547 395 aaPredicted RBP16.69■□□□□ 0.26
LIMS1-215ENST00000544547 PDIA4P13667 645 aaKnown RBP16.69■□□□□ 0.26
LIMS1-215ENST00000544547 OLFM4Q6UX06 510 aa16.69■□□□□ 0.26
LIMS1-215ENST00000544547 CHMP4CQ96CF2 233 aa16.69■□□□□ 0.26
LIMS1-215ENST00000544547 SIL1Q9H173 461 aa16.69■□□□□ 0.26
LIMS1-215ENST00000544547 CFAP45Q9UL16 551 aa16.69■□□□□ 0.26
LIMS1-215ENST00000544547 ISM2Q6H9L7 571 aa16.69■□□□□ 0.26
LIMS1-215ENST00000544547 DDX19AQ9NUU7 478 aaKnown RBP16.69■□□□□ 0.26
LIMS1-215ENST00000544547 DNAI1Q9UI46 699 aa16.69■□□□□ 0.26
LIMS1-215ENST00000544547 CFAP65Q6ZU64 1925 aaKnown RBP16.69■□□□□ 0.26
LIMS1-215ENST00000544547 CCP110O43303 1012 aa16.68■□□□□ 0.26
LIMS1-215ENST00000544547 ARHGAP29Q52LW3 1261 aa16.68■□□□□ 0.26
LIMS1-215ENST00000544547 IPO4Q8TEX9 1081 aaKnown RBP16.68■□□□□ 0.26
LIMS1-215ENST00000544547 BRD1O95696 1058 aa16.68■□□□□ 0.26
LIMS1-215ENST00000544547 RAPGEF4Q8WZA2 1011 aa16.68■□□□□ 0.26
LIMS1-215ENST00000544547 FAM193AP78312 1265 aa16.68■□□□□ 0.26
LIMS1-215ENST00000544547 VPS53Q5VIR6 699 aa16.68■□□□□ 0.26
LIMS1-215ENST00000544547 LRRFIP2Q9Y608 721 aaKnown RBP16.68■□□□□ 0.26
LIMS1-215ENST00000544547 ATP2B1P20020 1258 aa16.67■□□□□ 0.26
LIMS1-215ENST00000544547 DHX37Q8IY37 1157 aaKnown RBP16.67■□□□□ 0.26
LIMS1-215ENST00000544547 ARHGAP45Q92619 1136 aa16.67■□□□□ 0.26
LIMS1-215ENST00000544547 PRDM15P57071 1507 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-215ENST00000544547 ERVK-7P63135 1459 aa16.67■□□□□ 0.26
LIMS1-215ENST00000544547 AK2P54819 239 aa16.67■□□□□ 0.26
LIMS1-215ENST00000544547 ARHGEF5Q12774 1597 aa16.67■□□□□ 0.26
LIMS1-215ENST00000544547 ATP10AO60312 1499 aa16.67■□□□□ 0.26
LIMS1-215ENST00000544547 WASLO00401 505 aaPredicted RBP16.66■□□□□ 0.26
LIMS1-215ENST00000544547 GTF2A1P52655 376 aaPredicted RBP16.66■□□□□ 0.26
LIMS1-215ENST00000544547 ZNF396Q96N95 335 aaPredicted RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms