RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ODF2Q5BJF6 829 aa16.65■□□□□ 0.26
USP3-204ENST00000540797 ZHX3Q9H4I2 956 aa16.65■□□□□ 0.26
USP3-204ENST00000540797 FLT4P35916 1363 aa16.65■□□□□ 0.26
USP3-204ENST00000540797 ASXL1Q8IXJ9 1541 aa16.65■□□□□ 0.26
USP3-204ENST00000540797 ZNF76P36508 570 aa16.65■□□□□ 0.26
USP3-204ENST00000540797 PRPF40BQ6NWY9 871 aaKnown RBP16.65■□□□□ 0.26
USP3-204ENST00000540797 POLKQ9UBT6 870 aa16.65■□□□□ 0.26
USP3-204ENST00000540797 KRT85P78386 507 aa16.64■□□□□ 0.25
USP3-204ENST00000540797 RNF214Q8ND24 703 aa16.64■□□□□ 0.25
USP3-204ENST00000540797 CHPF2Q9P2E5 772 aa16.64■□□□□ 0.25
USP3-204ENST00000540797 NPATQ14207 1427 aa16.64■□□□□ 0.25
USP3-204ENST00000540797 TRPM2O94759 1503 aa16.64■□□□□ 0.25
USP3-204ENST00000540797 JARID2Q92833 1246 aaPredicted RBP16.64■□□□□ 0.25
USP3-204ENST00000540797 ABCC1P33527 1531 aa16.64■□□□□ 0.25
USP3-204ENST00000540797 XAGE3Q8WTP9 111 aa16.63■□□□□ 0.25
USP3-204ENST00000540797 FAM13BQ9NYF5 915 aa16.63■□□□□ 0.25
USP3-204ENST00000540797 FILIP1LQ4L180 1135 aa16.63■□□□□ 0.25
USP3-204ENST00000540797 SETDB2Q96T68 719 aa16.63■□□□□ 0.25
USP3-204ENST00000540797 PIP4K2AP48426 406 aaPredicted RBP16.63■□□□□ 0.25
USP3-204ENST00000540797 CCDC152Q4G0S7 254 aa16.63■□□□□ 0.25
USP3-204ENST00000540797 CEP170Q5SW79 1584 aa16.63■□□□□ 0.25
USP3-204ENST00000540797 ZNF444Q8N0Y2 327 aaPredicted RBP16.63■□□□□ 0.25
USP3-204ENST00000540797 YTHDC2Q9H6S0 1430 aaKnown RBP16.63■□□□□ 0.25
USP3-204ENST00000540797 TRAK2O60296 914 aa16.63■□□□□ 0.25
USP3-204ENST00000540797 COPS6Q7L5N1 327 aa16.62■□□□□ 0.25
USP3-204ENST00000540797 PBRM1Q86U86 1689 aa16.62■□□□□ 0.25
USP3-204ENST00000540797 RANBP6O60518 1105 aaKnown RBP16.62■□□□□ 0.25
USP3-204ENST00000540797 TTLL12Q14166 644 aaPredicted RBP16.61■□□□□ 0.25
USP3-204ENST00000540797 SEC63Q9UGP8 760 aaKnown RBP16.61■□□□□ 0.25
USP3-204ENST00000540797 LDHCP07864 332 aa16.61■□□□□ 0.25
USP3-204ENST00000540797 ZFYVE27Q5T4F4 411 aa16.61■□□□□ 0.25
USP3-204ENST00000540797 ECHDC1Q9NTX5 307 aa16.61■□□□□ 0.25
USP3-204ENST00000540797 MTHFSDQ2M296 383 aaKnown RBP16.61■□□□□ 0.25
USP3-204ENST00000540797 DDX11Q96FC9 970 aa16.61■□□□□ 0.25
USP3-204ENST00000540797 TRIM5Q9C035 493 aa16.61■□□□□ 0.25
USP3-204ENST00000540797 SMC2O95347 1197 aa16.61■□□□□ 0.25
USP3-204ENST00000540797 TTF1Q15361 905 aaPredicted RBP16.61■□□□□ 0.25
USP3-204ENST00000540797 SSBP05455 408 aaKnown RBP eCLIP16.6■□□□□ 0.25
USP3-204ENST00000540797 ZNF213O14771 459 aa16.6■□□□□ 0.25
USP3-204ENST00000540797 WDHD1O75717 1129 aaPredicted RBP16.6■□□□□ 0.25
USP3-204ENST00000540797 STIM1Q13586 685 aa16.6■□□□□ 0.25
USP3-204ENST00000540797 IQCA1Q86XH1 822 aa16.6■□□□□ 0.25
USP3-204ENST00000540797 SNRKQ9NRH2 765 aa16.6■□□□□ 0.25
USP3-204ENST00000540797 ATP7AQ04656 1500 aa16.6■□□□□ 0.25
USP3-204ENST00000540797 EIF2AK4Q9P2K8 1649 aaKnown RBP16.6■□□□□ 0.25
USP3-204ENST00000540797 BRPF1P55201 1214 aaPredicted RBP16.6■□□□□ 0.25
USP3-204ENST00000540797 GOLIM4O00461 696 aa16.59■□□□□ 0.25
USP3-204ENST00000540797 NFATC2IPQ8NCF5 419 aa16.59■□□□□ 0.25
USP3-204ENST00000540797 RNF41Q9H4P4 317 aaPredicted RBP16.59■□□□□ 0.25
USP3-204ENST00000540797 BMP2KQ9NSY1 1161 aaPredicted RBP16.59■□□□□ 0.25
USP3-204ENST00000540797 TSPY26PQ9H489 355 aa16.59■□□□□ 0.25
USP3-204ENST00000540797 EVI5LQ96CN4 794 aa16.59■□□□□ 0.25
USP3-204ENST00000540797 BTG4Q9NY30 223 aa16.59■□□□□ 0.25
USP3-204ENST00000540797 CFAP45Q9UL16 551 aa16.59■□□□□ 0.25
USP3-204ENST00000540797 CTCFLQ8NI51 663 aaPredicted RBP16.59■□□□□ 0.25
USP3-204ENST00000540797 SPATA32Q96LK8 384 aa16.59■□□□□ 0.25
USP3-204ENST00000540797 CCDC196A0A1B0GTZ2 297 aa16.58■□□□□ 0.24
USP3-204ENST00000540797 NASPP49321 788 aaPredicted RBP16.58■□□□□ 0.24
USP3-204ENST00000540797 ANKRD18AQ8IVF6 992 aa16.58■□□□□ 0.24
USP3-204ENST00000540797 SIRT1Q96EB6 747 aa16.58■□□□□ 0.24
USP3-204ENST00000540797 CCDC96Q2M329 555 aa16.58■□□□□ 0.24
USP3-204ENST00000540797 SPTY2D1Q68D10 685 aaPredicted RBP16.58■□□□□ 0.24
USP3-204ENST00000540797 NLRP3Q96P20 1036 aa16.58■□□□□ 0.24
USP3-204ENST00000540797 UPF3BQ9BZI7 483 aaKnown RBP16.58■□□□□ 0.24
USP3-204ENST00000540797 NIP7Q9Y221 180 aaKnown RBP eCLIP16.58■□□□□ 0.24
USP3-204ENST00000540797 HOXC9P31274 260 aa16.58■□□□□ 0.24
USP3-204ENST00000540797 IP6K1Q92551 441 aa16.58■□□□□ 0.24
USP3-204ENST00000540797 EYA1Q99502 592 aa16.58■□□□□ 0.24
USP3-204ENST00000540797 TNMDQ9H2S6 317 aa16.57■□□□□ 0.24
USP3-204ENST00000540797 BAG3O95817 575 aa16.57■□□□□ 0.24
USP3-204ENST00000540797 DCAF5Q96JK2 942 aa16.57■□□□□ 0.24
USP3-204ENST00000540797 DACH1Q9UI36 760 aa16.57■□□□□ 0.24
USP3-204ENST00000540797 HMGB1P09429 215 aaKnown RBP16.57■□□□□ 0.24
USP3-204ENST00000540797 CFAP43Q8NDM7 1665 aa16.57■□□□□ 0.24
USP3-204ENST00000540797 A0A1W2PP64 1363 aa16.57■□□□□ 0.24
USP3-204ENST00000540797 SYCP1Q15431 976 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 GPS2Q13227 327 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 ARHGAP45Q92619 1136 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 TESK2Q96S53 571 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 UQCRFS1P1P0C7P4 283 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 PDIA4P13667 645 aaKnown RBP16.56■□□□□ 0.24
USP3-204ENST00000540797 KSR2Q6VAB6 950 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 SMARCE1Q969G3 411 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 DZIP3Q86Y13 1208 aaKnown RBP16.56■□□□□ 0.24
USP3-204ENST00000540797 CCDC83Q8IWF9 413 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 ORAI2Q96SN7 254 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 TFCP2L1Q9NZI6 479 aa16.56■□□□□ 0.24
USP3-204ENST00000540797 RTCBQ9Y3I0 505 aaKnown RBP16.56■□□□□ 0.24
USP3-204ENST00000540797 PCDH11XQ9BZA7 1347 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 PCDH11YQ9BZA8 1340 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 SLC12A7Q9Y666 1083 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 MAPKBP1O60336 1514 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 MRE11P49959 708 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 C8orf58Q8NAV2 365 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 MAP3K19Q56UN5 1328 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 ALDH1L1O75891 902 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 PAXIP1Q6ZW49 1069 aaPredicted RBP16.55■□□□□ 0.24
USP3-204ENST00000540797 UTP14AQ9BVJ6 771 aaKnown RBP16.55■□□□□ 0.24
USP3-204ENST00000540797 CEP131Q9UPN4 1083 aa16.55■□□□□ 0.24
USP3-204ENST00000540797 IFIT3O14879 490 aaKnown RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms