RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 V9GYY5 206 aaPredicted RBP15.4■□□□□ 0.06
MSH6-210ENST00000540021 YTHDC2Q9H6S0 1430 aaKnown RBP15.4■□□□□ 0.06
MSH6-210ENST00000540021 TNNT1P13805 278 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 PDCP20941 246 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 ATP8B2P98198 1209 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 UVSSAQ2YD98 709 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 CCDC73Q6ZRK6 1079 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 INTS4Q96HW7 963 aaKnown RBP15.4■□□□□ 0.06
MSH6-210ENST00000540021 DNAJC2Q99543 621 aaKnown RBP15.4■□□□□ 0.06
MSH6-210ENST00000540021 SDF4Q9BRK5 362 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 ANAPC15P60006 121 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 ABCA6Q8N139 1617 aa15.4■□□□□ 0.06
MSH6-210ENST00000540021 IBTKQ9P2D0 1353 aaPredicted RBP15.4■□□□□ 0.06
MSH6-210ENST00000540021 CHL1O00533 1208 aa15.39■□□□□ 0.05
MSH6-210ENST00000540021 IQGAP1P46940 1657 aa15.39■□□□□ 0.05
MSH6-210ENST00000540021 GNAT3A8MTJ3 354 aa15.39■□□□□ 0.05
MSH6-210ENST00000540021 PSMA5P28066 241 aa15.39■□□□□ 0.05
MSH6-210ENST00000540021 CCAR2Q8N163 923 aaKnown RBP15.39■□□□□ 0.05
MSH6-210ENST00000540021 MYRIPQ8NFW9 859 aa15.39■□□□□ 0.05
MSH6-210ENST00000540021 PIBF1Q8WXW3 757 aa15.39■□□□□ 0.05
MSH6-210ENST00000540021 ASXL2Q76L83 1435 aa15.39■□□□□ 0.05
MSH6-210ENST00000540021 TERF1P54274 439 aa15.39■□□□□ 0.05
MSH6-210ENST00000540021 ABTB2Q8N961 1025 aa15.38■□□□□ 0.05
MSH6-210ENST00000540021 PHAXQ9H814 394 aaKnown RBP15.38■□□□□ 0.05
MSH6-210ENST00000540021 ERICH4A6NGS2 130 aa15.38■□□□□ 0.05
MSH6-210ENST00000540021 DACT1Q9NYF0 836 aa15.38■□□□□ 0.05
MSH6-210ENST00000540021 ZFYVE9O95405 1425 aa15.38■□□□□ 0.05
MSH6-210ENST00000540021 NCOA3Q9Y6Q9 1424 aa15.38■□□□□ 0.05
MSH6-210ENST00000540021 PI4KAP2A4QPH2 592 aa15.38■□□□□ 0.05
MSH6-210ENST00000540021 GLRX3O76003 335 aaKnown RBP15.38■□□□□ 0.05
MSH6-210ENST00000540021 U2AF2P26368 475 aaKnown RBP eCLIP15.38■□□□□ 0.052e-9■■■■■ 28.4
MSH6-210ENST00000540021 PI4KAP1Q8N8J0 262 aa15.38■□□□□ 0.05
MSH6-210ENST00000540021 SPHKAPQ2M3C7 1700 aa15.38■□□□□ 0.05
MSH6-210ENST00000540021 RIOK3O14730 519 aaKnown RBP15.37■□□□□ 0.05
MSH6-210ENST00000540021 ANO6Q4KMQ2 910 aa15.37■□□□□ 0.05
MSH6-210ENST00000540021 CLIP2Q9UDT6 1046 aa15.37■□□□□ 0.05
MSH6-210ENST00000540021 ACEP12821 1306 aa15.37■□□□□ 0.05
MSH6-210ENST00000540021 FAM69CQ0P6D2 419 aa15.37■□□□□ 0.05
MSH6-210ENST00000540021 PDLIM2Q96JY6 352 aa15.37■□□□□ 0.05
MSH6-210ENST00000540021 ZNF853P0CG23 659 aa15.37■□□□□ 0.05
MSH6-210ENST00000540021 ZNF165P49910 485 aa15.37■□□□□ 0.05
MSH6-210ENST00000540021 C1orf141Q5JVX7 400 aa15.37■□□□□ 0.05
MSH6-210ENST00000540021 ZSCAN31Q96LW9 406 aaPredicted RBP15.37■□□□□ 0.05
MSH6-210ENST00000540021 PA2G4Q9UQ80 394 aaKnown RBP15.37■□□□□ 0.05
MSH6-210ENST00000540021 SMC2O95347 1197 aa15.36■□□□□ 0.05
MSH6-210ENST00000540021 GUCY1B3Q02153 619 aa15.36■□□□□ 0.05
MSH6-210ENST00000540021 KINO60870 393 aaKnown RBP15.36■□□□□ 0.05
MSH6-210ENST00000540021 BRPF1P55201 1214 aaPredicted RBP15.36■□□□□ 0.05
MSH6-210ENST00000540021 RIC3Q7Z5B4 369 aa15.36■□□□□ 0.05
MSH6-210ENST00000540021 NEUROD6Q96NK8 337 aa15.36■□□□□ 0.05
MSH6-210ENST00000540021 SNX14Q9Y5W7 946 aa15.36■□□□□ 0.05
MSH6-210ENST00000540021 ME1P48163 572 aa15.36■□□□□ 0.05
MSH6-210ENST00000540021 CGNQ9P2M7 1197 aaKnown RBP15.36■□□□□ 0.05
MSH6-210ENST00000540021 HDAC5Q9UQL6 1122 aa15.36■□□□□ 0.05
MSH6-210ENST00000540021 CYP2E1P05181 493 aaPredicted RBP15.35■□□□□ 0.05
MSH6-210ENST00000540021 DNAJC25Q9H1X3 360 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 BCL2L12Q9HB09 334 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 RNF17Q9BXT8 1623 aaKnown RBP15.35■□□□□ 0.05
MSH6-210ENST00000540021 KIF1BO60333 1816 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 ZFYVE16Q7Z3T8 1539 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 PPP6R1Q9UPN7 881 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 EID1Q9Y6B2 187 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 A0A0G2JS52 829 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 TPM4P67936 248 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 LRRC2Q9BYS8 371 aa15.35■□□□□ 0.05
MSH6-210ENST00000540021 CEP152O94986 1710 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 CLEC17AQ6ZS10 378 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 OSCARQ8IYS5 282 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 TYRO3Q06418 890 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 SMAP1Q8IYB5 467 aaPredicted RBP15.34■□□□□ 0.05
MSH6-210ENST00000540021 FAM177A1Q8N128 213 aaPredicted RBP15.34■□□□□ 0.05
MSH6-210ENST00000540021 NEXNQ0ZGT2 675 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 RASEFQ8IZ41 740 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 FAM200AQ8TCP9 573 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 PYCARDQ9ULZ3 195 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 TTC21BQ7Z4L5 1316 aa15.34■□□□□ 0.05
MSH6-210ENST00000540021 DNAAF4Q8WXU2 420 aa15.33■□□□□ 0.04
MSH6-210ENST00000540021 PTCH1Q13635 1447 aa15.33■□□□□ 0.04
MSH6-210ENST00000540021 MYL6BP14649 208 aa15.33■□□□□ 0.04
MSH6-210ENST00000540021 LRMPQ12912 555 aa15.33■□□□□ 0.04
MSH6-210ENST00000540021 TRERF1Q96PN7 1200 aa15.33■□□□□ 0.04
MSH6-210ENST00000540021 CHMP4AQ9BY43 222 aa15.33■□□□□ 0.04
MSH6-210ENST00000540021 SH2B1Q9NRF2 756 aaPredicted RBP15.33■□□□□ 0.04
MSH6-210ENST00000540021 ECHDC1Q9NTX5 307 aa15.33■□□□□ 0.04
MSH6-210ENST00000540021 RBM8AQ9Y5S9 174 aaKnown RBP15.33■□□□□ 0.04
MSH6-210ENST00000540021 TET3O43151 1660 aa15.32■□□□□ 0.04
MSH6-210ENST00000540021 CHPF2Q9P2E5 772 aa15.32■□□□□ 0.04
MSH6-210ENST00000540021 SOS1Q07889 1333 aaPredicted RBP15.32■□□□□ 0.04
MSH6-210ENST00000540021 PTPN14Q15678 1187 aa15.32■□□□□ 0.04
MSH6-210ENST00000540021 CREBRFQ8IUR6 639 aa15.32■□□□□ 0.04
MSH6-210ENST00000540021 SCAND2PQ9GZW5 306 aaPredicted RBP15.32■□□□□ 0.04
MSH6-210ENST00000540021 FAM135BQ49AJ0 1406 aa15.31■□□□□ 0.04
MSH6-210ENST00000540021 HSPA4P34932 840 aa15.31■□□□□ 0.04
MSH6-210ENST00000540021 ZNF530Q6P9A1 599 aaPredicted RBP15.31■□□□□ 0.04
MSH6-210ENST00000540021 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.31■□□□□ 0.04
MSH6-210ENST00000540021 SGSM2O43147 1006 aa15.31■□□□□ 0.04
MSH6-210ENST00000540021 NBPF7P0C2Y1 421 aaPredicted RBP15.31■□□□□ 0.04
MSH6-210ENST00000540021 STK11IPQ8N1F8 1099 aa15.31■□□□□ 0.04
MSH6-210ENST00000540021 MPRIPQ6WCQ1 1025 aa15.31■□□□□ 0.04
MSH6-210ENST00000540021 EYA1Q99502 592 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms