RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 MRC1P22897 1456 aa25.67■■□□□ 1.7
USP39-203ENST00000409470 OTUD7AQ8TE49 926 aaPredicted RBP25.67■■□□□ 1.7
USP39-203ENST00000409470 MAP3K2Q9Y2U5 619 aa25.67■■□□□ 1.7
USP39-203ENST00000409470 PCDH11XQ9BZA7 1347 aa25.66■■□□□ 1.7
USP39-203ENST00000409470 PCDH11YQ9BZA8 1340 aa25.66■■□□□ 1.7
USP39-203ENST00000409470 TTC22Q5TAA0 569 aa25.66■■□□□ 1.7
USP39-203ENST00000409470 KSR2Q6VAB6 950 aa25.66■■□□□ 1.7
USP39-203ENST00000409470 CARD10Q9BWT7 1032 aa25.66■■□□□ 1.7
USP39-203ENST00000409470 GSPT1P15170 499 aaKnown RBP25.66■■□□□ 1.7
USP39-203ENST00000409470 ZNF496Q96IT1 587 aaPredicted RBP25.66■■□□□ 1.7
USP39-203ENST00000409470 NBR1Q14596 966 aa25.65■■□□□ 1.7
USP39-203ENST00000409470 DDX58O95786 925 aaKnown RBP25.64■■□□□ 1.7
USP39-203ENST00000409470 IL2RBP14784 551 aa25.64■■□□□ 1.69
USP39-203ENST00000409470 LARP1Q6PKG0 1096 aaKnown RBP25.64■■□□□ 1.69
USP39-203ENST00000409470 TBC1D9Q6ZT07 1266 aa25.64■■□□□ 1.69
USP39-203ENST00000409470 CDC45O75419 566 aa25.63■■□□□ 1.69
USP39-203ENST00000409470 NBPF7P0C2Y1 421 aaPredicted RBP25.63■■□□□ 1.69
USP39-203ENST00000409470 FMNL2Q96PY5 1086 aa25.63■■□□□ 1.69
USP39-203ENST00000409470 LRRCC1Q9C099 1032 aa25.63■■□□□ 1.69
USP39-203ENST00000409470 C5P01031 1676 aa25.63■■□□□ 1.69
USP39-203ENST00000409470 SNRPA1P09661 255 aaKnown RBP25.63■■□□□ 1.69
USP39-203ENST00000409470 AIMP1Q12904 312 aaKnown RBP25.63■■□□□ 1.69
USP39-203ENST00000409470 PDIA6Q15084 440 aa25.62■■□□□ 1.69
USP39-203ENST00000409470 ALDH1L1O75891 902 aa25.61■■□□□ 1.69
USP39-203ENST00000409470 PPP1R42Q7Z4L9 355 aa25.61■■□□□ 1.69
USP39-203ENST00000409470 SSH3Q8TE77 659 aa25.61■■□□□ 1.69
USP39-203ENST00000409470 IBTKQ9P2D0 1353 aaPredicted RBP25.6■■□□□ 1.69
USP39-203ENST00000409470 MYL6BP14649 208 aa25.6■■□□□ 1.69
USP39-203ENST00000409470 C9orf78Q9NZ63 289 aaPredicted RBP25.59■■□□□ 1.69
USP39-203ENST00000409470 DDX54Q8TDD1 881 aaKnown RBP25.58■■□□□ 1.69
USP39-203ENST00000409470 SRGAP3O43295 1099 aa25.58■■□□□ 1.68
USP39-203ENST00000409470 RIC3Q7Z5B4 369 aa25.58■■□□□ 1.68
USP39-203ENST00000409470 USP16Q9Y5T5 823 aa25.58■■□□□ 1.68
USP39-203ENST00000409470 POLA2Q14181 598 aa25.57■■□□□ 1.68
USP39-203ENST00000409470 ERVV-2B6SEH9 535 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 PDE1AP54750 535 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 CWF19L2Q2TBE0 894 aaKnown RBP25.56■■□□□ 1.68
USP39-203ENST00000409470 LINS1Q8NG48 757 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 USP35Q9P2H5 1018 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 EIF5BO60841 1220 aaKnown RBP25.56■■□□□ 1.68
USP39-203ENST00000409470 SDSP20132 328 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 RBM25P49756 843 aaKnown RBP25.56■■□□□ 1.68
USP39-203ENST00000409470 XAGE3Q8WTP9 111 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 OSBPL3Q9H4L5 887 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 BTG4Q9NY30 223 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 HDAC5Q9UQL6 1122 aa25.56■■□□□ 1.68
USP39-203ENST00000409470 SURF6O75683 361 aaKnown RBP25.55■■□□□ 1.68
USP39-203ENST00000409470 MYT1Q01538 1121 aa25.55■■□□□ 1.68
USP39-203ENST00000409470 ROBO1Q9Y6N7 1651 aa25.55■■□□□ 1.68
USP39-203ENST00000409470 NKX1-1Q15270 411 aaPredicted RBP25.54■■□□□ 1.68
USP39-203ENST00000409470 COPS6Q7L5N1 327 aa25.54■■□□□ 1.68
USP39-203ENST00000409470 RAB11FIP3O75154 756 aa25.54■■□□□ 1.68
USP39-203ENST00000409470 TBC1D2Q9BYX2 928 aa25.53■■□□□ 1.68
USP39-203ENST00000409470 NEXNQ0ZGT2 675 aa25.53■■□□□ 1.68
USP39-203ENST00000409470 CASC1Q6TDU7 716 aa25.53■■□□□ 1.68
USP39-203ENST00000409470 MX1P20591 662 aa25.52■■□□□ 1.68
USP39-203ENST00000409470 PIP4K2AP48426 406 aaPredicted RBP25.51■■□□□ 1.67
USP39-203ENST00000409470 SALL3Q9BXA9 1300 aa25.51■■□□□ 1.67
USP39-203ENST00000409470 GRM8O00222 908 aa25.51■■□□□ 1.67
USP39-203ENST00000409470 RTL5Q5HYW3 569 aaPredicted RBP25.5■■□□□ 1.67
USP39-203ENST00000409470 IL1RAPL2Q9NP60 686 aa25.49■■□□□ 1.67
USP39-203ENST00000409470 SHANK3Q9BYB0 1731 aa25.49■■□□□ 1.67
USP39-203ENST00000409470 MTX1Q13505 466 aa25.49■■□□□ 1.67
USP39-203ENST00000409470 HSP90AB4PQ58FF6 505 aa25.49■■□□□ 1.67
USP39-203ENST00000409470 TSHZ3Q63HK5 1081 aa25.49■■□□□ 1.67
USP39-203ENST00000409470 ANKRD13DQ6ZTN6 518 aa25.49■■□□□ 1.67
USP39-203ENST00000409470 AHDC1Q5TGY3 1603 aaPredicted RBP25.48■■□□□ 1.67
USP39-203ENST00000409470 LRP10Q7Z4F1 713 aa25.48■■□□□ 1.67
USP39-203ENST00000409470 RHPN1Q8TCX5 695 aa25.48■■□□□ 1.67
USP39-203ENST00000409470 METTL22Q9BUU2 404 aaPredicted RBP25.48■■□□□ 1.67
USP39-203ENST00000409470 IGKV5-2P06315 115 aa25.47■■□□□ 1.67
USP39-203ENST00000409470 KIF1BPQ96EK5 621 aa25.47■■□□□ 1.67
USP39-203ENST00000409470 MYD88Q99836 296 aa25.47■■□□□ 1.67
USP39-203ENST00000409470 UTYO14607 1347 aa25.47■■□□□ 1.67
USP39-203ENST00000409470 LAMB4A4D0S4 1761 aa25.47■■□□□ 1.67
USP39-203ENST00000409470 COL14A1Q05707 1796 aaKnown RBP25.46■■□□□ 1.67
USP39-203ENST00000409470 OS9Q13438 667 aaPredicted RBP25.46■■□□□ 1.67
USP39-203ENST00000409470 GLI3P10071 1580 aa25.46■■□□□ 1.67
USP39-203ENST00000409470 NEURL1BA8MQ27 555 aa25.46■■□□□ 1.67
USP39-203ENST00000409470 SUCLG2Q96I99 432 aa25.46■■□□□ 1.67
USP39-203ENST00000409470 STAP2Q9UGK3 403 aa25.46■■□□□ 1.67
USP39-203ENST00000409470 PTCD1O75127 700 aaKnown RBP25.44■■□□□ 1.66
USP39-203ENST00000409470 ERBB4Q15303 1308 aa25.44■■□□□ 1.66
USP39-203ENST00000409470 HSCBQ8IWL3 235 aa25.44■■□□□ 1.66
USP39-203ENST00000409470 LTBP4Q8N2S1 1624 aa25.43■■□□□ 1.66
USP39-203ENST00000409470 GCKRQ14397 625 aa25.43■■□□□ 1.66
USP39-203ENST00000409470 NUTM1Q86Y26 1132 aa25.43■■□□□ 1.66
USP39-203ENST00000409470 SLKQ9H2G2 1235 aaPredicted RBP25.43■■□□□ 1.66
USP39-203ENST00000409470 TMOD3Q9NYL9 352 aa25.43■■□□□ 1.66
USP39-203ENST00000409470 UBR2Q8IWV8 1755 aa25.43■■□□□ 1.66
USP39-203ENST00000409470 BICC1Q9H694 974 aaKnown RBP25.42■■□□□ 1.66
USP39-203ENST00000409470 AOX1Q06278 1338 aa25.42■■□□□ 1.66
USP39-203ENST00000409470 COL22A1Q8NFW1 1626 aaPredicted RBP25.42■■□□□ 1.66
USP39-203ENST00000409470 KCPQ6ZWJ8 1503 aa25.42■■□□□ 1.66
USP39-203ENST00000409470 PAPPAQ13219 1627 aa25.41■■□□□ 1.66
USP39-203ENST00000409470 TRIM6-TRIM34B2RNG4 842 aa25.41■■□□□ 1.66
USP39-203ENST00000409470 PLBD2Q8NHP8 589 aa25.41■■□□□ 1.66
USP39-203ENST00000409470 KAZALD1Q96I82 304 aa25.41■■□□□ 1.66
USP39-203ENST00000409470 NBPF26B4DH59 902 aa25.4■■□□□ 1.66
USP39-203ENST00000409470 NBPF14Q5TI25 921 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms