RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 SAMM50Q9Y512 469 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 ANXA1P04083 346 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 CCDC184Q52MB2 194 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 EFCAB5A4FU69 1503 aa18.2■□□□□ 0.5
PTPRF-201ENST00000359947 IFIT3O14879 490 aaKnown RBP18.19■□□□□ 0.5
PTPRF-201ENST00000359947 MYO1BO43795 1136 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 TOM1O60784 492 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 MRE11P49959 708 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 UPF3BQ9BZI7 483 aaKnown RBP18.19■□□□□ 0.5
PTPRF-201ENST00000359947 WDR70Q9NW82 654 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 PPP1R12BO60237 982 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-201ENST00000359947 CCT2P78371 535 aaKnown RBP18.19■□□□□ 0.5
PTPRF-201ENST00000359947 IFNL2Q8IZJ0 200 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 CCP110O43303 1012 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 IQSEC3Q9UPP2 1182 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-201ENST00000359947 ADGRF5Q8IZF2 1346 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 GLRX3O76003 335 aaKnown RBP18.19■□□□□ 0.5
PTPRF-201ENST00000359947 RAB11FIP4Q86YS3 637 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 GOLIM4O00461 696 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 NLRP5P59047 1200 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 KIAA1328Q86T90 577 aa18.19■□□□□ 0.5
PTPRF-201ENST00000359947 CDC5LQ99459 802 aaKnown RBP18.19■□□□□ 0.5
PTPRF-201ENST00000359947 RBM26Q5T8P6 1007 aaKnown RBP18.18■□□□□ 0.5
PTPRF-201ENST00000359947 GOLGA6L10A6NI86 522 aa18.18■□□□□ 0.5
PTPRF-201ENST00000359947 UBE3BQ7Z3V4 1068 aa18.18■□□□□ 0.5
PTPRF-201ENST00000359947 PPP1R42Q7Z4L9 355 aa18.18■□□□□ 0.5
PTPRF-201ENST00000359947 ZSCAN31Q96LW9 406 aaPredicted RBP18.18■□□□□ 0.5
PTPRF-201ENST00000359947 RAB11FIP3O75154 756 aa18.18■□□□□ 0.5
PTPRF-201ENST00000359947 CABLES1Q8TDN4 633 aa18.18■□□□□ 0.5
PTPRF-201ENST00000359947 POTEJP0CG39 1038 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 CWC25Q9NXE8 425 aaPredicted RBP18.17■□□□□ 0.5
PTPRF-201ENST00000359947 DBF4Q9UBU7 674 aaPredicted RBP18.17■□□□□ 0.5
PTPRF-201ENST00000359947 C16orf71Q8IYS4 520 aaPredicted RBP18.17■□□□□ 0.5
PTPRF-201ENST00000359947 DRC1Q96MC2 740 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 CADPS2Q86UW7 1296 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 MSH6P52701 1360 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 FAM83GA6ND36 823 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 CABP5Q9NP86 173 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 HAND2P61296 217 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 FILIP1Q7Z7B0 1213 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 PLCD3Q8N3E9 789 aa18.17■□□□□ 0.5
PTPRF-201ENST00000359947 ZRSR2Q15696 482 aaKnown RBP18.16■□□□□ 0.5
PTPRF-201ENST00000359947 SSH1Q8WYL5 1049 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 DNAJC5BQ9UF47 199 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 MAGI1Q96QZ7 1491 aaPredicted RBP18.16■□□□□ 0.5
PTPRF-201ENST00000359947 TAF3Q5VWG9 929 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 PLB1Q6P1J6 1458 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 NUP62CLQ9H1M0 184 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 TSPY2A6NKD2 308 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 CATIPQ7Z7H3 387 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 SETDB2Q96T68 719 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 TSPYL1Q9H0U9 437 aa18.16■□□□□ 0.5
PTPRF-201ENST00000359947 CCDC141Q6ZP82 1450 aa18.15■□□□□ 0.5
PTPRF-201ENST00000359947 FANCIQ9NVI1 1328 aa18.15■□□□□ 0.5
PTPRF-201ENST00000359947 ANKRD18AQ8IVF6 992 aa18.15■□□□□ 0.5
PTPRF-201ENST00000359947 CBFA2T2O43439 604 aa18.15■□□□□ 0.5
PTPRF-201ENST00000359947 SSRP1Q08945 709 aaKnown RBP18.15■□□□□ 0.5
PTPRF-201ENST00000359947 TNNT1P13805 278 aa18.15■□□□□ 0.5
PTPRF-201ENST00000359947 DNA2P51530 1060 aa18.15■□□□□ 0.5
PTPRF-201ENST00000359947 PICALMQ13492 652 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 CFAP100Q494V2 611 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 PSMD1Q99460 953 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 C8orf76Q96K31 380 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 ACEP12821 1306 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 FAM135AQ9P2D6 1515 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 ANAPC15P60006 121 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 SPTY2D1Q68D10 685 aaPredicted RBP18.14■□□□□ 0.49
PTPRF-201ENST00000359947 CCDC194A0A1B0GVG4 234 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 GOLGA8BA8MQT2 603 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 HLA-DOAP06340 250 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 CCDC196A0A1B0GTZ2 297 aa18.14■□□□□ 0.49
PTPRF-201ENST00000359947 GOLGA8AA7E2F4 631 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 BAG3O95817 575 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 CCDC191Q8NCU4 936 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 TMEM266Q2M3C6 531 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 KIF14Q15058 1648 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 TXLNBQ8N3L3 684 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 GBP2P32456 591 aaPredicted RBP18.13■□□□□ 0.49
PTPRF-201ENST00000359947 ZNF397Q8NF99 534 aaPredicted RBP18.13■□□□□ 0.49
PTPRF-201ENST00000359947 PLCD4Q9BRC7 762 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 TFCP2L1Q9NZI6 479 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 HSPA2P54652 639 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 SLFN5Q08AF3 891 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 SLC39A6Q13433 755 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 TSHZ3Q63HK5 1081 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 DNAI2Q9GZS0 605 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 EHMT1Q9H9B1 1298 aa18.13■□□□□ 0.49
PTPRF-201ENST00000359947 MACROD2A1Z1Q3 448 aa18.12■□□□□ 0.49
PTPRF-201ENST00000359947 CCDC150Q8NCX0 1101 aa18.12■□□□□ 0.49
PTPRF-201ENST00000359947 TSG101Q99816 390 aa18.12■□□□□ 0.49
PTPRF-201ENST00000359947 EPB41L2O43491 1005 aaKnown RBP18.12■□□□□ 0.49
PTPRF-201ENST00000359947 FLIIQ13045 1269 aa18.12■□□□□ 0.49
PTPRF-201ENST00000359947 PLS1Q14651 629 aa18.12■□□□□ 0.49
PTPRF-201ENST00000359947 IQGAP2Q13576 1575 aa18.11■□□□□ 0.49
PTPRF-201ENST00000359947 ZCRB1Q8TBF4 217 aaKnown RBP18.11■□□□□ 0.49
PTPRF-201ENST00000359947 TEX13AQ9BXU3 409 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-201ENST00000359947 CAMSAP2Q08AD1 1489 aa18.11■□□□□ 0.49
PTPRF-201ENST00000359947 KAT14Q9H8E8 782 aa18.11■□□□□ 0.49
PTPRF-201ENST00000359947 CACNA2D4Q7Z3S7 1137 aa18.11■□□□□ 0.49
PTPRF-201ENST00000359947 VEZTQ9HBM0 779 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms