RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 SRCIN1Q9C0H9 1055 aa11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 ZSCAN16Q9H4T2 348 aaPredicted RBP11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 CLIP2Q9UDT6 1046 aa11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 UHRF1BP1Q6BDS2 1440 aa11.4□□□□□ -0.59
PTCHD4-201ENST00000339488 APBB1O00213 710 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 FBXW10Q5XX13 1052 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 NOB1Q9ULX3 412 aaKnown RBP11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 KDM5DQ9BY66 1539 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 RAD50Q92878 1312 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 TBC1D8O95759 1140 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 SUGP1Q8IWZ8 645 aaKnown RBP11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 C16orf71Q8IYS4 520 aaPredicted RBP11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 LARP6Q9BRS8 491 aaKnown RBP11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 CFAP74Q9C0B2 1584 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 TROQ12816 1431 aaPredicted RBP11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 SWT1Q5T5J6 900 aaKnown RBP11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 NYAP1Q6ZVC0 841 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 FILIP1Q7Z7B0 1213 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 OTUD7AQ8TE49 926 aaPredicted RBP11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 VPS18Q9P253 973 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 DDX19BQ9UMR2 479 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 FRMD3A2A2Y4 597 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 H0YHG0 523 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 LIG3P49916 1009 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 SARNPP82979 210 aaKnown RBP11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 SSH1Q8WYL5 1049 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 ZNF75DP51815 510 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 TCP11L2Q8N4U5 519 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 ZBTB40Q9NUA8 1239 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 PLXNC1O60486 1568 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ASXL2Q76L83 1435 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 SKILP12757 684 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ATP2B2Q01814 1243 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 MORC1Q86VD1 984 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ZNF428Q96B54 188 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 JPH2Q9BR39 696 aaPredicted RBP11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ERBINQ96RT1 1412 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ARID4AP29374 1257 aaPredicted RBP11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 CORO7P57737 925 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 FAXDC2Q96IV6 333 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ORC3Q9UBD5 711 aaPredicted RBP11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 PLEKHD1A6NEE1 506 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 CAND2O75155 1236 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 TMF1P82094 1093 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 ANO6Q4KMQ2 910 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 NBPF6Q5VWK0 638 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 KCNV1Q6PIU1 500 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 KIRREL3Q8IZU9 778 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 NBPF4Q96M43 638 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 UPF3BQ9BZI7 483 aaKnown RBP11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 CBX8Q9HC52 389 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 USP16Q9Y5T5 823 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 TTC37Q6PGP7 1564 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 N4BP1O75113 896 aaKnown RBP11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 PHACTR2O75167 634 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 SMC2O95347 1197 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 EXOSC9Q06265 439 aaKnown RBP11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC30Q5VVM6 783 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 JMYQ8N9B5 988 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 UBXN4Q92575 508 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 MRVI1Q9Y6F6 885 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 ATF7IPQ6VMQ6 1270 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 LRRC8AQ8IWT6 810 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 FAM200AQ8TCP9 573 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 CEP89Q96ST8 783 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 UBXN6Q9BZV1 441 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 IRAK4Q9NWZ3 460 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 A0A087WWV3 80 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 SKAP2O75563 359 aaPredicted RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 GNL2Q13823 731 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 TADA2BQ86TJ2 420 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 THOC1Q96FV9 657 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 RABEP2Q9H5N1 569 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 ARGLU1Q9NWB6 273 aaPredicted RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 TCOF1Q13428 1488 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 WDR7Q9Y4E6 1490 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC171Q6TFL3 1326 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 DAPK1P53355 1430 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC196A0A1B0GTZ2 297 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC192P0DO97 292 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 TYRO3Q06418 890 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 EXOC4Q96A65 974 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 EME2A4GXA9 379 aaPredicted RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC69A6NI79 296 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 TPM1P09493 284 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 HNRNPH1P31943 449 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 SNW1Q13573 536 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCAR2Q8N163 923 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 PALD1Q9ULE6 856 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 UBE2HP62256 183 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 NBPF10Q6P3W6 841 aaKnown RBP11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 GIMAP7Q8NHV1 300 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 IVLP07476 585 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 CC2D1AQ6P1N0 951 aaPredicted RBP11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 PLA2G4DQ86XP0 818 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 IQUBQ8NA54 791 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 CARD6Q9BX69 1037 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 PPIP5K1Q6PFW1 1433 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 ABCC10Q5T3U5 1492 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms