RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 MKNK2Q9HBH9 465 aa17.78■□□□□ 0.44
C9orf47-201ENST00000334490 ZNF287Q9HBT7 754 aa17.78■□□□□ 0.44
C9orf47-201ENST00000334490 POLR3AO14802 1390 aaPredicted RBP17.77■□□□□ 0.44
C9orf47-201ENST00000334490 PRPF40AO75400 957 aaKnown RBP17.77■□□□□ 0.44
C9orf47-201ENST00000334490 EIF2AK4Q9P2K8 1649 aaKnown RBP17.77■□□□□ 0.44
C9orf47-201ENST00000334490 MPHOSPH10O00566 681 aaKnown RBP17.77■□□□□ 0.44
C9orf47-201ENST00000334490 PIBF1Q8WXW3 757 aa17.77■□□□□ 0.44
C9orf47-201ENST00000334490 SNRKQ9NRH2 765 aa17.77■□□□□ 0.44
C9orf47-201ENST00000334490 ADGRL2O95490 1459 aa17.77■□□□□ 0.44
C9orf47-201ENST00000334490 CASTP20810 708 aaKnown RBP17.77■□□□□ 0.43
C9orf47-201ENST00000334490 PRPF40BQ6NWY9 871 aaKnown RBP17.77■□□□□ 0.43
C9orf47-201ENST00000334490 ZSCAN31Q96LW9 406 aaPredicted RBP17.77■□□□□ 0.43
C9orf47-201ENST00000334490 SETDB2Q96T68 719 aa17.77■□□□□ 0.43
C9orf47-201ENST00000334490 ECHDC1Q9NTX5 307 aa17.77■□□□□ 0.43
C9orf47-201ENST00000334490 TMEM2Q9UHN6 1383 aa17.76■□□□□ 0.43
C9orf47-201ENST00000334490 CCAR2Q8N163 923 aaKnown RBP17.76■□□□□ 0.43
C9orf47-201ENST00000334490 DCAF5Q96JK2 942 aa17.76■□□□□ 0.43
C9orf47-201ENST00000334490 PHACTR3Q96KR7 559 aa17.76■□□□□ 0.43
C9orf47-201ENST00000334490 NAT10Q9H0A0 1025 aaKnown RBP17.76■□□□□ 0.43
C9orf47-201ENST00000334490 YEATS2Q9ULM3 1422 aa17.76■□□□□ 0.43
C9orf47-201ENST00000334490 LTKP29376 864 aa17.76■□□□□ 0.43
C9orf47-201ENST00000334490 UPF3BQ9BZI7 483 aaKnown RBP17.76■□□□□ 0.43
C9orf47-201ENST00000334490 MBD3O95983 291 aa17.75■□□□□ 0.43
C9orf47-201ENST00000334490 KRT18P05783 430 aaKnown RBP17.75■□□□□ 0.43
C9orf47-201ENST00000334490 PARD3Q8TEW0 1356 aa17.75■□□□□ 0.43
C9orf47-201ENST00000334490 SIRT1Q96EB6 747 aa17.75■□□□□ 0.43
C9orf47-201ENST00000334490 WDR33Q9C0J8 1336 aaKnown RBP17.75■□□□□ 0.43
C9orf47-201ENST00000334490 ARHGEF12Q9NZN5 1544 aa17.75■□□□□ 0.43
C9orf47-201ENST00000334490 ARHGAP45Q92619 1136 aa17.75■□□□□ 0.43
C9orf47-201ENST00000334490 SLAIN2Q9P270 581 aa17.75■□□□□ 0.43
C9orf47-201ENST00000334490 ST5P78524 1137 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 CCDC152Q4G0S7 254 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 SAMD9Q5K651 1589 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 MEIS3Q99687 375 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 MAST1Q9Y2H9 1570 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 KSR2Q6VAB6 950 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 SKAP1Q86WV1 359 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 PRM3Q9NNZ6 103 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 NIP7Q9Y221 180 aaKnown RBP eCLIP17.74■□□□□ 0.43
C9orf47-201ENST00000334490 GOLIM4O00461 696 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 ME1P48163 572 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 CAVIN1Q6NZI2 390 aaKnown RBP17.74■□□□□ 0.43
C9orf47-201ENST00000334490 RNF214Q8ND24 703 aa17.74■□□□□ 0.43
C9orf47-201ENST00000334490 ZFYVE16Q7Z3T8 1539 aa17.73■□□□□ 0.43
C9orf47-201ENST00000334490 EPS15P42566 896 aa17.73■□□□□ 0.43
C9orf47-201ENST00000334490 TMEM132AQ24JP5 1023 aa17.73■□□□□ 0.43
C9orf47-201ENST00000334490 SLF2Q8IX21 1173 aa17.73■□□□□ 0.43
C9orf47-201ENST00000334490 NLRP3Q96P20 1036 aa17.73■□□□□ 0.43
C9orf47-201ENST00000334490 ARID3AQ99856 593 aa17.73■□□□□ 0.43
C9orf47-201ENST00000334490 A0A0U1RQG5 324 aaPredicted RBP17.73■□□□□ 0.43
C9orf47-201ENST00000334490 NOL7Q9UMY1 257 aaKnown RBP17.73■□□□□ 0.43
C9orf47-201ENST00000334490 KRT85P78386 507 aa17.72■□□□□ 0.43
C9orf47-201ENST00000334490 DDX17Q92841 729 aaKnown RBP17.72■□□□□ 0.43
C9orf47-201ENST00000334490 DDX11Q96FC9 970 aa17.72■□□□□ 0.43
C9orf47-201ENST00000334490 MAP3K5Q99683 1374 aa17.72■□□□□ 0.43
C9orf47-201ENST00000334490 RANBP6O60518 1105 aaKnown RBP17.72■□□□□ 0.43
C9orf47-201ENST00000334490 LMBR1LQ6UX01 489 aa17.72■□□□□ 0.43
C9orf47-201ENST00000334490 DZIP3Q86Y13 1208 aaKnown RBP17.72■□□□□ 0.43
C9orf47-201ENST00000334490 GRM8O00222 908 aa17.71■□□□□ 0.43
C9orf47-201ENST00000334490 TRAK2O60296 914 aa17.71■□□□□ 0.43
C9orf47-201ENST00000334490 OFD1O75665 1012 aa17.71■□□□□ 0.43
C9orf47-201ENST00000334490 ALDH1L1O75891 902 aa17.71■□□□□ 0.43
C9orf47-201ENST00000334490 KRT24Q2M2I5 525 aa17.71■□□□□ 0.43
C9orf47-201ENST00000334490 PCDH11XQ9BZA7 1347 aa17.71■□□□□ 0.43
C9orf47-201ENST00000334490 PCDH11YQ9BZA8 1340 aa17.71■□□□□ 0.43
C9orf47-201ENST00000334490 ZNF444Q8N0Y2 327 aaPredicted RBP17.71■□□□□ 0.43
C9orf47-201ENST00000334490 ZNF592Q92610 1267 aa17.71■□□□□ 0.43
C9orf47-201ENST00000334490 CFAP65Q6ZU64 1925 aaKnown RBP17.71■□□□□ 0.43
C9orf47-201ENST00000334490 ZNF213O14771 459 aa17.7■□□□□ 0.42
C9orf47-201ENST00000334490 LDHCP07864 332 aa17.7■□□□□ 0.42
C9orf47-201ENST00000334490 ANKRD18AQ8IVF6 992 aa17.7■□□□□ 0.42
C9orf47-201ENST00000334490 CNKSR2Q8WXI2 1034 aa17.7■□□□□ 0.42
C9orf47-201ENST00000334490 ZFYVE9O95405 1425 aa17.7■□□□□ 0.42
C9orf47-201ENST00000334490 HOMER1Q86YM7 354 aa17.7■□□□□ 0.42
C9orf47-201ENST00000334490 EVI5LQ96CN4 794 aa17.7■□□□□ 0.42
C9orf47-201ENST00000334490 TFCP2L1Q9NZI6 479 aa17.7■□□□□ 0.42
C9orf47-201ENST00000334490 RTCBQ9Y3I0 505 aaKnown RBP17.7■□□□□ 0.42
C9orf47-201ENST00000334490 PER1O15534 1290 aaPredicted RBP17.7■□□□□ 0.42
C9orf47-201ENST00000334490 RNMTO43148 476 aaKnown RBP17.7■□□□□ 0.42
C9orf47-201ENST00000334490 RHPN1Q8TCX5 695 aa17.69■□□□□ 0.42
C9orf47-201ENST00000334490 IQCA1Q86XH1 822 aa17.69■□□□□ 0.42
C9orf47-201ENST00000334490 ZHX3Q9H4I2 956 aa17.69■□□□□ 0.42
C9orf47-201ENST00000334490 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.69■□□□□ 0.42
C9orf47-201ENST00000334490 TTF1Q15361 905 aaPredicted RBP17.69■□□□□ 0.42
C9orf47-201ENST00000334490 WASF1Q92558 559 aa17.69■□□□□ 0.42
C9orf47-201ENST00000334490 TSHZ3Q63HK5 1081 aa17.69■□□□□ 0.42
C9orf47-201ENST00000334490 TSPYL6Q8N831 410 aa17.69■□□□□ 0.42
C9orf47-201ENST00000334490 LINS1Q8NG48 757 aa17.69■□□□□ 0.42
C9orf47-201ENST00000334490 MRPL50Q8N5N7 158 aaKnown RBP17.68■□□□□ 0.42
C9orf47-201ENST00000334490 EDC4Q6P2E9 1401 aaKnown RBP17.67■□□□□ 0.42
C9orf47-201ENST00000334490 ZNF76P36508 570 aa17.67■□□□□ 0.42
C9orf47-201ENST00000334490 RSPH6AQ9H0K4 717 aa17.67■□□□□ 0.42
C9orf47-201ENST00000334490 RNF41Q9H4P4 317 aaPredicted RBP17.67■□□□□ 0.42
C9orf47-201ENST00000334490 TPTE2Q6XPS3 522 aa17.67■□□□□ 0.42
C9orf47-201ENST00000334490 CTCFLQ8NI51 663 aaPredicted RBP17.67■□□□□ 0.42
C9orf47-201ENST00000334490 UTP14AQ9BVJ6 771 aaKnown RBP17.67■□□□□ 0.42
C9orf47-201ENST00000334490 CDCA7Q9BWT1 371 aaPredicted RBP17.67■□□□□ 0.42
C9orf47-201ENST00000334490 LETM1O95202 739 aaPredicted RBP17.67■□□□□ 0.42
C9orf47-201ENST00000334490 CCDC83Q8IWF9 413 aa17.67■□□□□ 0.42
C9orf47-201ENST00000334490 CCDC82Q8N4S0 544 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms