RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 MFAP1P55081 439 aaKnown RBP11.9□□□□□ -0.5
TRIM55-201ENST00000276573 NKX1-1Q15270 411 aaPredicted RBP11.9□□□□□ -0.5
TRIM55-201ENST00000276573 TTC5Q8N0Z6 440 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 MAP3K2Q9Y2U5 619 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 MRC1P22897 1456 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 PCDH11XQ9BZA7 1347 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 PCDH11YQ9BZA8 1340 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 SNRPA1P09661 255 aaKnown RBP11.9□□□□□ -0.5
TRIM55-201ENST00000276573 OTUD7AQ8TE49 926 aaPredicted RBP11.9□□□□□ -0.5
TRIM55-201ENST00000276573 SSH3Q8TE77 659 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 FMNL2Q96PY5 1086 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 C22orf23Q9BZE7 217 aa11.9□□□□□ -0.5
TRIM55-201ENST00000276573 ERVV-2B6SEH9 535 aa11.89□□□□□ -0.51
TRIM55-201ENST00000276573 DDX58O95786 925 aaKnown RBP11.89□□□□□ -0.51
TRIM55-201ENST00000276573 NBPF7P0C2Y1 421 aaPredicted RBP11.89□□□□□ -0.51
TRIM55-201ENST00000276573 TTC22Q5TAA0 569 aa11.89□□□□□ -0.51
TRIM55-201ENST00000276573 EXOC6BQ9Y2D4 811 aa11.89□□□□□ -0.51
TRIM55-201ENST00000276573 USP16Q9Y5T5 823 aa11.89□□□□□ -0.51
TRIM55-201ENST00000276573 GSPT1P15170 499 aaKnown RBP11.88□□□□□ -0.51
TRIM55-201ENST00000276573 POLA2Q14181 598 aa11.88□□□□□ -0.51
TRIM55-201ENST00000276573 BCL11AQ9H165 835 aa11.88□□□□□ -0.51
TRIM55-201ENST00000276573 PARP4Q9UKK3 1724 aaKnown RBP11.88□□□□□ -0.51
TRIM55-201ENST00000276573 AIMP1Q12904 312 aaKnown RBP11.88□□□□□ -0.51
TRIM55-201ENST00000276573 PPP1R42Q7Z4L9 355 aa11.88□□□□□ -0.51
TRIM55-201ENST00000276573 OSBPL3Q9H4L5 887 aa11.88□□□□□ -0.51
TRIM55-201ENST00000276573 TBC1D9Q6ZT07 1266 aa11.87□□□□□ -0.51
TRIM55-201ENST00000276573 LINS1Q8NG48 757 aa11.87□□□□□ -0.51
TRIM55-201ENST00000276573 DDX54Q8TDD1 881 aaKnown RBP11.87□□□□□ -0.51
TRIM55-201ENST00000276573 LRRCC1Q9C099 1032 aa11.87□□□□□ -0.51
TRIM55-201ENST00000276573 BTG4Q9NY30 223 aa11.87□□□□□ -0.51
TRIM55-201ENST00000276573 CDC45O75419 566 aa11.87□□□□□ -0.51
TRIM55-201ENST00000276573 MYL6BP14649 208 aa11.87□□□□□ -0.51
TRIM55-201ENST00000276573 COPS6Q7L5N1 327 aa11.87□□□□□ -0.51
TRIM55-201ENST00000276573 IBTKQ9P2D0 1353 aaPredicted RBP11.86□□□□□ -0.51
TRIM55-201ENST00000276573 RAB11FIP3O75154 756 aa11.86□□□□□ -0.51
TRIM55-201ENST00000276573 PDE1AP54750 535 aa11.86□□□□□ -0.51
TRIM55-201ENST00000276573 BECN1Q14457 450 aa11.86□□□□□ -0.51
TRIM55-201ENST00000276573 LRP10Q7Z4F1 713 aa11.86□□□□□ -0.51
TRIM55-201ENST00000276573 RIC3Q7Z5B4 369 aa11.86□□□□□ -0.51
TRIM55-201ENST00000276573 XAGE3Q8WTP9 111 aa11.86□□□□□ -0.51
TRIM55-201ENST00000276573 C9orf78Q9NZ63 289 aaPredicted RBP11.86□□□□□ -0.51
TRIM55-201ENST00000276573 HDAC5Q9UQL6 1122 aa11.86□□□□□ -0.51
TRIM55-201ENST00000276573 C5P01031 1676 aa11.86□□□□□ -0.51
TRIM55-201ENST00000276573 RBM25P49756 843 aaKnown RBP11.85□□□□□ -0.51
TRIM55-201ENST00000276573 CWF19L2Q2TBE0 894 aaKnown RBP11.85□□□□□ -0.51
TRIM55-201ENST00000276573 SALL3Q9BXA9 1300 aa11.85□□□□□ -0.51
TRIM55-201ENST00000276573 UTYO14607 1347 aa11.85□□□□□ -0.51
TRIM55-201ENST00000276573 SRGAP3O43295 1099 aa11.85□□□□□ -0.51
TRIM55-201ENST00000276573 SDSP20132 328 aa11.85□□□□□ -0.51
TRIM55-201ENST00000276573 MTX1Q13505 466 aa11.85□□□□□ -0.51
TRIM55-201ENST00000276573 ANKRD13DQ6ZTN6 518 aa11.85□□□□□ -0.51
TRIM55-201ENST00000276573 ROBO1Q9Y6N7 1651 aa11.84□□□□□ -0.51
TRIM55-201ENST00000276573 LTBP4Q8N2S1 1624 aa11.84□□□□□ -0.51
TRIM55-201ENST00000276573 EIF5BO60841 1220 aaKnown RBP11.84□□□□□ -0.51
TRIM55-201ENST00000276573 SURF6O75683 361 aaKnown RBP11.84□□□□□ -0.51
TRIM55-201ENST00000276573 METTL22Q9BUU2 404 aaPredicted RBP11.84□□□□□ -0.51
TRIM55-201ENST00000276573 USP35Q9P2H5 1018 aa11.84□□□□□ -0.51
TRIM55-201ENST00000276573 AHDC1Q5TGY3 1603 aaPredicted RBP11.84□□□□□ -0.51
TRIM55-201ENST00000276573 GRM8O00222 908 aa11.83□□□□□ -0.52
TRIM55-201ENST00000276573 IGKV5-2P06315 115 aa11.83□□□□□ -0.52
TRIM55-201ENST00000276573 STAP2Q9UGK3 403 aa11.83□□□□□ -0.52
TRIM55-201ENST00000276573 NEXNQ0ZGT2 675 aa11.83□□□□□ -0.52
TRIM55-201ENST00000276573 ERBB4Q15303 1308 aa11.82□□□□□ -0.52
TRIM55-201ENST00000276573 PIP4K2AP48426 406 aaPredicted RBP11.82□□□□□ -0.52
TRIM55-201ENST00000276573 HSP90AB4PQ58FF6 505 aa11.82□□□□□ -0.52
TRIM55-201ENST00000276573 RHPN1Q8TCX5 695 aa11.82□□□□□ -0.52
TRIM55-201ENST00000276573 TBC1D2Q9BYX2 928 aa11.82□□□□□ -0.52
TRIM55-201ENST00000276573 COL14A1Q05707 1796 aaKnown RBP11.82□□□□□ -0.52
TRIM55-201ENST00000276573 SHANK3Q9BYB0 1731 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 NEURL1BA8MQ27 555 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 MX1P20591 662 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 KIF1BPQ96EK5 621 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 SUCLG2Q96I99 432 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 MYD88Q99836 296 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 NBPF26B4DH59 902 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 GCKRQ14397 625 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 NBR1Q14596 966 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 NBPF14Q5TI25 921 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 NBPF10Q6P3W6 841 aaKnown RBP11.81□□□□□ -0.52
TRIM55-201ENST00000276573 NBPF15Q8N660 670 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 KAZALD1Q96I82 304 aa11.81□□□□□ -0.52
TRIM55-201ENST00000276573 COL22A1Q8NFW1 1626 aaPredicted RBP11.81□□□□□ -0.52
TRIM55-201ENST00000276573 PTCD1O75127 700 aaKnown RBP11.8□□□□□ -0.52
TRIM55-201ENST00000276573 CASC1Q6TDU7 716 aa11.8□□□□□ -0.52
TRIM55-201ENST00000276573 PLBD2Q8NHP8 589 aa11.8□□□□□ -0.52
TRIM55-201ENST00000276573 IL1RAPL2Q9NP60 686 aa11.8□□□□□ -0.52
TRIM55-201ENST00000276573 TMOD3Q9NYL9 352 aa11.8□□□□□ -0.52
TRIM55-201ENST00000276573 GLI3P10071 1580 aa11.8□□□□□ -0.52
TRIM55-201ENST00000276573 AOX1Q06278 1338 aa11.8□□□□□ -0.52
TRIM55-201ENST00000276573 KIF2CQ99661 725 aa11.79□□□□□ -0.52
TRIM55-201ENST00000276573 KCPQ6ZWJ8 1503 aa11.79□□□□□ -0.52
TRIM55-201ENST00000276573 DISP2A7MBM2 1401 aa11.79□□□□□ -0.52
TRIM55-201ENST00000276573 A1BGP04217 495 aa11.79□□□□□ -0.52
TRIM55-201ENST00000276573 TSHZ3Q63HK5 1081 aa11.79□□□□□ -0.52
TRIM55-201ENST00000276573 USP26Q9BXU7 913 aa11.79□□□□□ -0.52
TRIM55-201ENST00000276573 BICC1Q9H694 974 aaKnown RBP11.79□□□□□ -0.52
TRIM55-201ENST00000276573 TNS2Q63HR2 1409 aa11.78□□□□□ -0.52
TRIM55-201ENST00000276573 UBR2Q8IWV8 1755 aa11.78□□□□□ -0.52
TRIM55-201ENST00000276573 EXOC5O00471 708 aa11.78□□□□□ -0.52
TRIM55-201ENST00000276573 NUTM1Q86Y26 1132 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms