RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 RHBDF1Q96CC6 855 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 COL21A1Q96P44 957 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SECISBP2Q96T21 854 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 EPYCQ99645 322 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ABCG4Q9H172 646 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 P2RY12Q9H244 342 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CWH43Q9H720 699 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ELAC1Q9H777 363 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CCSER2Q9H7U1 834 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 IL1RAPQ9NPH3 570 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 PAK1IP1Q9NWT1 392 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CLN6Q9NWW5 311 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SPG21Q9NZD8 308 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CCDC59Q9P031 241 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 NOSIPQ9Y314 301 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 NAALAD2Q9Y3Q0 740 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 U3KQV3 271 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SNTNA6NMZ2 147 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 C5orf58C9J3I9 102 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 H3BQ06 376 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 YKT6O15498 198 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 DPM1O60762 260 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 MT-ND2P03891 347 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ADH1AP07327 375 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CYP4B1P13584 511 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CR2P20023 1033 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 HTR1BP28222 390 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 HNF4AP41235 474 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CSNK1DP48730 415 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 AFF1P51825 1210 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ITGA1P56199 1179 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SMIM11AP58511 58 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 BPIFB3P59826 476 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ISL1P61371 349 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 RPS24P62847 133 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 EMX1Q04741 257 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 DUSP4Q13115 394 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 C1DQ13901 141 aaKnown RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SELPLGQ14242 412 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CCL14Q16627 93 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TIGD6Q17RP2 521 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ANKDD1AQ495B1 522 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SETMARQ53H47 684 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CPTPQ5TA50 214 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 FRG2Q64ET8 278 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TRIM40Q6P9F5 258 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SBSNQ6UWP8 590 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 AHSA2Q719I0 299 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 C16orf59Q7L2K0 433 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 NXPE1Q8N323 547 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CAMKK1Q8N5S9 505 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CLHC1Q8NHS4 586 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 UBE2E3Q969T4 207 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SH3KBP1Q96B97 665 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TMCO6Q96DC7 493 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CXorf40BQ96DE9 158 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 LGALS12Q96DT0 336 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TPD52L3Q96J77 140 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 APOLD1Q96LR9 279 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 FRG2BQ96QU4 278 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 TEX12Q9BXU0 123 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 AKIP1Q9NQ31 210 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ABCB10Q9NRK6 738 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 SLAMF8Q9P0V8 285 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 CHD7Q9P2D1 2997 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ERVK-18Q9QC07 812 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 RNF6Q9Y252 685 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ANGPT4Q9Y264 503 aa3.85□□□□□ -1.79
SCN1A-214ENST00000637038 ERVH48-1M5A8F1 160 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TNFRSF11BO00300 401 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TRBC1P01850 177 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ZDHHC11BP0C7U3 371 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ALOX12P18054 663 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 KDELR2P33947 212 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PBX2P40425 430 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PIK3CBP42338 1070 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PGFP49763 221 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 HK3P52790 923 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 EPHB3P54753 998 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 RPS3AP61247 264 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 LSM3P62310 102 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 RBBP4Q09028 425 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 RAPSNQ13702 412 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 MAD2L1BPQ15013 274 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 EIF4HQ15056 248 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TBCEQ15813 527 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 IFI44LQ53G44 452 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PLEKHS1Q5SXH7 462 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 GCNT6Q5T4J0 391 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 LIPJQ5W064 366 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 NADSYN1Q6IA69 706 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PNCKQ6P2M8 343 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF367Q7RTV3 350 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CALHM3Q86XJ0 350 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PGBD3Q8N328 593 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CNIH3Q8TBE1 160 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 GPR152Q8TDT2 470 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 FAR1Q8WVX9 515 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SUSD6Q92537 303 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 USP7Q93009 1102 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms