RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SLCO4C1Q6ZQN7 724 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 PRSS58Q8IYP2 241 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 NCSTNQ92542 709 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 CCDC90BQ9GZT6 254 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 EPHX3Q9H6B9 360 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 SUCOQ9UBS9 1254 aaKnown RBP15.1■□□□□ 0.01
CPSF1-213ENST00000620219 ACSL6Q9UKU0 697 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 SZT2Q5T011 3432 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 A0A1W2PQF6 199 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 SHMT2P34897 504 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 CSNK1EP49674 416 aaKnown RBP15.1■□□□□ 0.01
CPSF1-213ENST00000620219 SEPHS1P49903 392 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 POLE2P56282 527 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 Q8N9G6 341 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-213ENST00000620219 OR8K5Q8NH50 307 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 MVB12BQ9H7P6 319 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 MAGEL2Q9UJ55 1249 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 LRRC42Q9Y546 428 aa15.1■□□□□ 0.01
CPSF1-213ENST00000620219 GUCY1B2O75343 617 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 CST1P01037 141 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 ALBP02768 609 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 FEN1P39748 380 aaKnown RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 RABIFP47224 123 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 CLDN8P56748 225 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 MRPS35P82673 323 aaKnown RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 SLC9A5Q14940 896 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 TMEM214Q6NUQ4 689 aaKnown RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 DPH2Q9BQC3 489 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 SH3GLB1Q9Y371 365 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 PCYT1BQ9Y5K3 369 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 CXCR6O00574 342 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 TNNI3P19429 210 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 TLX1P31314 330 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 RHDQ02161 417 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 PYCR3Q53H96 274 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 CBR4Q8N4T8 237 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 SETD7Q8WTS6 366 aaKnown RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 ERN1O75460 977 aaKnown RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 GCKP35557 465 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 RPL3P39023 403 aaKnown RBP15.09■□□□□ 0.01
CPSF1-213ENST00000620219 DEFB134Q4QY38 66 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 PRR23BQ6ZRT6 265 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 ATG16L2Q8NAA4 619 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 SLC22A18Q96BI1 424 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 FCRL4Q96PJ5 515 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 RBCK1Q9BYM8 510 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 OR52A5Q9H2C5 316 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 TPT1P8Q9HAU6 139 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 FZD4Q9ULV1 537 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 PRSS51A0A1B0GVH4 220 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 CPED1A4D0V7 1026 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 MAGEA13PA6NCF6 341 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 ZNF217O75362 1048 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 SERPINA1P01009 418 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 CXCL12P48061 93 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 SLC6A12P48065 614 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 HHEXQ03014 270 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 PDK3Q15120 406 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 DEFB133Q30KQ1 61 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 USP30Q70CQ3 517 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 USP53Q70EK8 1073 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 MIEF2Q96C03 454 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 RMI1Q9H9A7 625 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 SNX7Q9UNH6 387 aa15.09■□□□□ 0.01
CPSF1-213ENST00000620219 TDRD6O60522 2096 aaKnown RBP15.08■□□□□ 0.01
CPSF1-213ENST00000620219 SPINT1O43278 529 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 HS6ST1O60243 411 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 EEDO75530 441 aaKnown RBP15.08■□□□□ 0.01
CPSF1-213ENST00000620219 OXTRP30559 389 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 XKR7Q5GH72 579 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 ZNF786Q8N393 782 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 OR56A3Q8NH54 315 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 UBTD2Q8WUN7 234 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 TIMM29Q9BSF4 260 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 TBC1D17Q9HA65 648 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 PRDM6Q9NQX0 595 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 SPTBP11277 2137 aa15.08■□□□□ 0.01
CPSF1-213ENST00000620219 hCG_2039718K7EN88 272 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 SOD1P00441 154 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 NR2F1P10589 423 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 TSSK4Q6SA08 328 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 LILRA2Q8N149 483 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 METTL27Q8N6F8 245 aaPredicted RBP15.08■□□□□ 0
CPSF1-213ENST00000620219 ZNF655Q8N720 491 aaPredicted RBP15.08■□□□□ 0
CPSF1-213ENST00000620219 SLC35A5Q9BS91 424 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 CHID1Q9BWS9 393 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 C1QTNF3Q9BXJ4 246 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 ADPRHL2Q9NX46 363 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 SH2B3Q9UQQ2 575 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 ZNF780BQ9Y6R6 833 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 URADA6NGE7 173 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 ZNF10P21506 573 aaPredicted RBP15.08■□□□□ 0
CPSF1-213ENST00000620219 STXBP1P61764 594 aaKnown RBP15.08■□□□□ 0
CPSF1-213ENST00000620219 KIAA0895LQ68EN5 471 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 KLHL35Q6PF15 583 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 RNF111Q6ZNA4 994 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 ZDHHC13Q8IUH4 622 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 MSLNLQ96KJ4 702 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 DMRT3Q9NQL9 472 aa15.08■□□□□ 0
CPSF1-213ENST00000620219 DIRAS1O95057 198 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms