RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ITPKBP27987 946 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 FOXA1P55317 472 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 CLN3Q13286 438 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 GGTA1PQ4G0N0 100 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 FAM219BQ5XKK7 198 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 CLEC6AQ6EIG7 209 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 BPHLQ86WA6 291 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-207ENST00000597136 MYLK4Q86YV6 388 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-207ENST00000597136 TMEM126BQ8IUX1 230 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 ZNF655Q8N720 491 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-207ENST00000597136 CDYL2Q8N8U2 506 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 ZNF740Q8NDX6 193 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 OR4K1Q8NGD4 311 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 N4BP2L2Q92802 583 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-207ENST00000597136 NKD1Q969G9 470 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 PTCD3Q96EY7 689 aaKnown RBP14.31□□□□□ -0.12
TRIM28-207ENST00000597136 KCNA7Q96RP8 456 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 PELI2Q9HAT8 420 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 TRPS1Q9UHF7 1281 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 CACNA1GO43497 2377 aa14.31□□□□□ -0.12
TRIM28-207ENST00000597136 KCNE1BA0A087WTH5 132 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 TMEM8BA6NDV4 472 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 SRRM3A6NNA2 597 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 H0YGG7 62 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 AZIN1O14977 448 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ZNF749O43361 778 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 CAPN1P07384 714 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 KITP10721 976 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 HRH2P25021 359 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 CCR8P51685 355 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ARF3P61204 181 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 UGT3A2Q3SY77 523 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ZC3H12BQ5HYM0 836 aaKnown RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 WASHC2DQ5SRD0 308 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 LCN10Q6JVE6 187 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 FAM199XQ6PEV8 388 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 RNF44Q7L0R7 432 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 KIRREL3Q8IZU9 778 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 CLYBLQ8N0X4 340 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 DTWD1Q8N5C7 304 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ZNF248Q8NDW4 579 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 OR8K5Q8NH50 307 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 PIWIL2Q8TC59 973 aaKnown RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 MAGEB10Q96LZ2 347 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 OR2A5Q96R48 311 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ZFYVE21Q9BQ24 234 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 MACROD1Q9BQ69 325 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 EFCAB11Q9BUY7 163 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 EPN3Q9H201 632 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 FANCEQ9HB96 536 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 GEMIN8Q9NWZ8 242 aaKnown RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 MARCOQ9UEW3 520 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 STMND1H3BQB6 276 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 KLK10O43240 276 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 CRCPO75575 148 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 MED26O95402 600 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 EIF2S1P05198 315 aaKnown RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ATXN8OSP0DMR3 200 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 UROSP10746 265 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 DRD4P21917 467 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 HNF4AP41235 474 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 SNRPNP63162 240 aaKnown RBP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 SLBPQ14493 270 aaKnown RBP eCLIP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 CPSF6Q16630 551 aaKnown RBP eCLIP14.3□□□□□ -0.12
TRIM28-207ENST00000597136 KANK2Q63ZY3 851 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 GRHL2Q6ISB3 625 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 VASH2Q86V25 355 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 METTL6Q8TCB7 284 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ZNF285Q96NJ3 590 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 SLC29A3Q9BZD2 475 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 IRAK4Q9NWZ3 460 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ANKMY1Q9P2S6 941 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 FIS1Q9Y3D6 152 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 TIMM22Q9Y584 194 aa14.3□□□□□ -0.12
TRIM28-207ENST00000597136 ATMQ13315 3056 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 LOC101059948A0A1B0GTJ6 334 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 FFAR3O14843 346 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 GPR42O15529 346 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 P2RX6O15547 441 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 RAD1O60671 282 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 TGDSO95455 350 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 LIPCP11150 499 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 SERPINB3P29508 390 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 LAPTM5Q13571 262 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 ZRSR2Q15696 482 aaKnown RBP14.29□□□□□ -0.12
TRIM28-207ENST00000597136 HKDC1Q2TB90 917 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 PAGE2BQ5JRK9 111 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 CGB2Q6NT52 195 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 CYB5D1Q6P9G0 228 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 C6orf15Q6UXA7 325 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-207ENST00000597136 GPR135Q8IZ08 494 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 CACNA2D3Q8IZS8 1091 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 KCNE4Q8WWG9 221 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 CLIP3Q96DZ5 547 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 FAR2Q96K12 515 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 AIF1LQ9BQI0 150 aa14.29□□□□□ -0.12
TRIM28-207ENST00000597136 ACTR5Q9H9F9 607 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-207ENST00000597136 DHCR7Q9UBM7 475 aaKnown RBP14.29□□□□□ -0.12
TRIM28-207ENST00000597136 ZNF490Q9ULM2 529 aaPredicted RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms