RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PRR22Q8IZ63 422 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 SLC34A3Q8N130 599 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 CCDC185Q8N715 623 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 TC2NQ8N9U0 490 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 OR9Q2Q8NGE9 314 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 ROBO4Q8WZ75 1007 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 MGME1Q9BQP7 344 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 SLC2A11Q9BYW1 496 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 FAM129AQ9BZQ8 928 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 SNX25Q9H3E2 840 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 MOB1AQ9H8S9 216 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 PKD2L2Q9NZM6 624 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 WDR35Q9P2L0 1181 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 MORF4L1Q9UBU8 362 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 POLLQ9UGP5 575 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 FBXL4Q9UKA2 621 aa2.21□□□□□ -2.06
VPS35-207ENST00000568191 A0A087WZ39 114 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 A0A1B0GTH9 108 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 URADA6NGE7 173 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 ARHGEF33A8MVX0 844 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 ZNF354AO60765 605 aaPredicted RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 ATP6AP2O75787 350 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 LUC7L3O95232 432 aaKnown RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 CELF2O95319 508 aaKnown RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 ATP6V1B1P15313 513 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 EPORP19235 508 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 RPL9P32969 192 aaKnown RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 ELK3P41970 407 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 KHKP50053 298 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 POLR2LP62875 67 aaKnown RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 RALGDSQ12967 914 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 SNTB1Q13884 538 aaKnown RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 RALBP1Q15311 655 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 FUT10Q6P4F1 479 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 TMEM64Q6YI46 380 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 RAPH1Q70E73 1250 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 CENPVQ7Z7K6 275 aaPredicted RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 PRSS35Q8N3Z0 413 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 CARNMT1Q8N4J0 409 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 CD177Q8N6Q3 437 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 KLHL30-AS1Q8NEE0 82 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 OR5M9Q8NGP3 310 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 CASP10Q92851 521 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 OTUB1Q96FW1 271 aaPredicted RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 ZIM3Q96PE6 472 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 TMX4Q9H1E5 349 aaPredicted RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 RIMS4Q9H426 269 aaPredicted RBP2.2□□□□□ -2.06
VPS35-207ENST00000568191 ST6GALNAC4Q9H4F1 302 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 ABCB10Q9NRK6 738 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 ANAPC2Q9UJX6 822 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 COLEC10Q9Y6Z7 277 aa2.2□□□□□ -2.06
VPS35-207ENST00000568191 IGHV3-20A0A0C4DH32 117 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 AP5Z1O43299 807 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 TNFSF12O43508 249 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 TLX2O43763 284 aaPredicted RBP2.19□□□□□ -2.06
VPS35-207ENST00000568191 LY6G6DO95868 133 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 GSRP00390 522 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 THY1P04216 161 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 FAM200BP0CF97 657 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 RAB28P51157 221 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 OR1D5P58170 312 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 DLK1P80370 383 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 RBPJQ06330 500 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 SULT2A1Q06520 285 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 ALCAMQ13740 583 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 CAPRIN1Q14444 709 aaKnown RBP2.19□□□□□ -2.06
VPS35-207ENST00000568191 PRR30Q53SZ7 412 aaPredicted RBP2.19□□□□□ -2.06
VPS35-207ENST00000568191 C9orf152Q5JTZ5 239 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 C9orf66Q5T8R8 295 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 MARC1Q5VT66 337 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 GPR139Q6DWJ6 353 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 NAA16Q6N069 864 aaPredicted RBP2.19□□□□□ -2.06
VPS35-207ENST00000568191 REG3GQ6UW15 175 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 IL17RELQ6ZVW7 336 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 TLK2Q86UE8 772 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 SERINC5Q86VE9 423 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 LRRC49Q8IUZ0 686 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 RTL3Q8N8U3 475 aaKnown RBP2.19□□□□□ -2.06
VPS35-207ENST00000568191 LRTM2Q8N967 370 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 POGLUT1Q8NBL1 392 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 KCTD6Q8NC69 237 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 GRK7Q8WTQ7 553 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 SEPT1Q8WYJ6 367 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 HDAC11Q96DB2 347 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 RADILQ96JH8 1075 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 APOL2Q9BQE5 337 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 DNAI2Q9GZS0 605 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 UBA5Q9GZZ9 404 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 SLITRK2Q9H156 845 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 MARCH7Q9H992 704 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 KCNK13Q9HB14 408 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 RAVER2Q9HCJ3 691 aaKnown RBP2.19□□□□□ -2.06
VPS35-207ENST00000568191 ANKEF1Q9NU02 776 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 ADAM22Q9P0K1 906 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 NYAP2Q9P242 653 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 C5AR2Q9P296 337 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 PLCL2Q9UPR0 1127 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 MRPS18CQ9Y3D5 142 aaKnown RBP2.19□□□□□ -2.06
VPS35-207ENST00000568191 NAALAD2Q9Y3Q0 740 aa2.19□□□□□ -2.06
VPS35-207ENST00000568191 KIF25-AS1Q9Y6Z4 181 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms