RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TSPAN17Q96FV3 270 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 PEX11GQ96HA9 241 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 CPNE1Q99829 537 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 AIF1LQ9BQI0 150 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 MCMBPQ9BTE3 642 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 TUBB6Q9BUF5 446 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 UNKQ9C0B0 810 aaKnown RBP19.59■□□□□ 0.73
CLN3-219ENST00000565778 PELI2Q9HAT8 420 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 LRRC4CQ9HCJ2 640 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 C19orf25Q9UFG5 118 aaPredicted RBP19.59■□□□□ 0.73
CLN3-219ENST00000565778 ZFP69BQ9UJL9 534 aa19.59■□□□□ 0.73
CLN3-219ENST00000565778 IGHV3-20A0A0C4DH32 117 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 TCRBV9S1A1TA0A576 114 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 BLACEA4D250 179 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 ZNF860A6NHJ4 632 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 H2AFYO75367 372 aaKnown RBP19.58■□□□□ 0.72
CLN3-219ENST00000565778 CBX6O95503 412 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 CELA2AP08217 269 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 GSTA2P09210 222 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 CCDC166P0CW27 439 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 SCTRP47872 440 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 TMPRSS11BQ86T26 416 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 TRPV3Q8NET8 790 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 OR1N1Q8NGS0 311 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 IMMP1LQ96LU5 166 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 SPNS1Q9H2V7 528 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 PLA2G3Q9NZ20 509 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 SPENQ96T58 3664 aaKnown RBP19.58■□□□□ 0.72
CLN3-219ENST00000565778 NUP210LQ5VU65 1888 aa19.58■□□□□ 0.72
CLN3-219ENST00000565778 NCF1BA6NI72 391 aaPredicted RBP19.57■□□□□ 0.72
CLN3-219ENST00000565778 FAM159BA6NKW6 160 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 NCF1CA8MVU1 366 aaPredicted RBP19.57■□□□□ 0.72
CLN3-219ENST00000565778 SEC24DO94855 1032 aaPredicted RBP19.57■□□□□ 0.72
CLN3-219ENST00000565778 WDR47O94967 919 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 CYC1P08574 325 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 ITGAMP11215 1152 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 NCF1P14598 390 aaPredicted RBP19.57■□□□□ 0.72
CLN3-219ENST00000565778 ALOX12P18054 663 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 IL10P22301 178 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 AHRP35869 848 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 GP5P40197 560 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 HNF4AP41235 474 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 GDF5P43026 501 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 GPX6P59796 221 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 SKP1P63208 163 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 ACTN3Q08043 901 aaPredicted RBP19.57■□□□□ 0.72
CLN3-219ENST00000565778 ELOAQ14241 798 aaKnown RBP19.57■□□□□ 0.72
CLN3-219ENST00000565778 TRADDQ15628 312 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 C18orf21Q32NC0 220 aaPredicted RBP19.57■□□□□ 0.72
CLN3-219ENST00000565778 DEFB134Q4QY38 66 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 LANCL3Q6ZV70 420 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 AMER2Q8N7J2 671 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 OR5T3Q8NGG3 340 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 NT5CQ8TCD5 201 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 FBXO25Q8TCJ0 367 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 RBBP8Q99708 897 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 DERL2Q9GZP9 239 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 NTNG1Q9Y2I2 539 aa19.57■□□□□ 0.72
CLN3-219ENST00000565778 DOCK10Q96BY6 2186 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 URADA6NGE7 173 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 A8MUI8 341 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 PHGDHO43175 533 aaKnown RBP19.56■□□□□ 0.72
CLN3-219ENST00000565778 GALR3O60755 368 aaPredicted RBP19.56■□□□□ 0.72
CLN3-219ENST00000565778 SEMA7AO75326 666 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 CDC123O75794 336 aaPredicted RBP19.56■□□□□ 0.72
CLN3-219ENST00000565778 B3GALT4O96024 378 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 ZNF888P0CJ79 500 aaPredicted RBP19.56■□□□□ 0.72
CLN3-219ENST00000565778 STMN1P16949 149 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 GNAZP19086 355 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 SPRP35270 261 aaPredicted RBP19.56■□□□□ 0.72
CLN3-219ENST00000565778 MAGEA4P43358 317 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 TSFMP43897 325 aaKnown RBP19.56■□□□□ 0.72
CLN3-219ENST00000565778 AGTR2P50052 363 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 REEP5Q00765 189 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 TGFBIQ15582 683 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 NSDHLQ15738 373 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 BTBD16Q32M84 506 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 GRTP1Q5TC63 336 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 B3GNTL1Q67FW5 361 aaPredicted RBP19.56■□□□□ 0.72
CLN3-219ENST00000565778 NIPAL1Q6NVV3 410 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 ABHD13Q7L211 337 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 ANKRD37Q7Z713 158 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 GPSM1Q86YR5 675 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 AFAP1L2Q8N4X5 818 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 ANKRD53Q8N9V6 530 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 HAS2Q92819 552 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 RHBDF1Q96CC6 855 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 PSMG3-AS1Q96PY0 264 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 RBCK1Q9BYM8 510 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 STMN3Q9NZ72 180 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 SCN3AQ9NY46 2000 aa19.56■□□□□ 0.72
CLN3-219ENST00000565778 HECTD1Q9ULT8 2610 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 ANKUB1A6NFN9 424 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 CHST10O43529 356 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 DNAJB6O75190 326 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 F10P00742 488 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 C1GALT1C1LP0DN25 315 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 SOX11P35716 441 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 RAB8AP61006 207 aa19.55■□□□□ 0.72
CLN3-219ENST00000565778 OLR1P78380 273 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms