RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PRAMEF13Q5VWM6 474 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 PPP4R4Q6NUP7 873 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 DNAJC14Q6Y2X3 702 aaPredicted RBP17.09■□□□□ 0.33
SNX1-208ENST00000559844 ZBTB49Q6ZSB9 765 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 DTWD1Q8N5C7 304 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 MFSD2AQ8NA29 543 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 OR52E4Q8NGH9 312 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 OR10A6Q8NH74 314 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 ATOH1Q92858 354 aaPredicted RBP17.09■□□□□ 0.33
SNX1-208ENST00000559844 KLHDC7BQ96G42 594 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 EGLN2Q96KS0 407 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 OSBPL11Q9BXB4 747 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 ACSL5Q9ULC5 683 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 TSC22D4Q9Y3Q8 395 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 PCDHB14Q9Y5E9 798 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 MYO15AQ9UKN7 3530 aa17.09■□□□□ 0.33
SNX1-208ENST00000559844 LRP4O75096 1905 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 A0A1W2PR77 199 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 ELOVL7A1L3X0 281 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 RFXANKO14593 260 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 LRATO95237 230 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 WNT1P04628 370 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 COX7A2P14406 83 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 CSNK1EP49674 416 aaKnown RBP17.08■□□□□ 0.33
SNX1-208ENST00000559844 AFF3P51826 1226 aaKnown RBP17.08■□□□□ 0.33
SNX1-208ENST00000559844 CHN2P52757 468 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 DUOXA1Q1HG43 343 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 CATSPEREQ5SY80 951 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 THEMIS2Q5TEJ8 643 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 SLC22A18ASQ8N1D0 253 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 C1orf52Q8N6N3 182 aaKnown RBP17.08■□□□□ 0.33
SNX1-208ENST00000559844 ZNF548Q8NEK5 533 aaPredicted RBP17.08■□□□□ 0.33
SNX1-208ENST00000559844 OR8J2Q8NGG1 315 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 OR5K2Q8NHB8 316 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 FAM174AQ8TBP5 190 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 CIB1Q99828 191 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 C9orf16Q9BUW7 83 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 YY1AP1Q9H869 796 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 RMI1Q9H9A7 625 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 SIRT5Q9NXA8 310 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 SPATA7Q9P0W8 599 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 SLC23A2Q9UGH3 650 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 SUSD2Q9UGT4 822 aa17.08■□□□□ 0.33
SNX1-208ENST00000559844 TMEM131Q92545 1883 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 ADAMTS9Q9P2N4 1935 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 A0A1B0GTW7 788 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 PIPSLA2A3N6 862 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 TOR1BO14657 336 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 SLC35G4P0C7Q5 338 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 HOXB9P17482 250 aaPredicted RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 SOX11P35716 441 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 KIAA1024LP59773 190 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 RPS13P62277 151 aaKnown RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 YPEL5P62699 121 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 DMPKQ09013 629 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 NFATC4Q14934 902 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 UGT8Q16880 541 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 FAM98BQ52LJ0 330 aaKnown RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 TPRG1LQ5T0D9 272 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 OR4F3Q6IEY1 312 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 IQCHQ86VS3 1027 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 MICU2Q8IYU8 434 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 SPDYE1Q8NFV5 336 aaPredicted RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 OR5AR1Q8NGP9 310 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 FAM120BQ96EK7 910 aaKnown RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 PRPF18Q99633 342 aaKnown RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 UGT2B28Q9BY64 529 aa17.08■□□□□ 0.32
SNX1-208ENST00000559844 TRIT1Q9H3H1 467 aaKnown RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 KAT8Q9H7Z6 458 aaKnown RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 GEMIN8Q9NWZ8 242 aaKnown RBP17.08■□□□□ 0.32
SNX1-208ENST00000559844 KCNJ13O60928 360 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 ERGP11308 486 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 HTR1BP28222 390 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 TIA1P31483 386 aaKnown RBP eCLIP17.07■□□□□ 0.329e-6■□□□□ 8.2
SNX1-208ENST00000559844 HPCAL1P37235 193 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 CCT8P50990 548 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 ATP6AP1Q15904 470 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 NRF1Q16656 503 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 GTDC1Q4AE62 458 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 ST13P4Q8IZP2 240 aaPredicted RBP17.07■□□□□ 0.32
SNX1-208ENST00000559844 KRT78Q8N1N4 520 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 FAM110BQ8TC76 370 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 GFM2Q969S9 779 aaKnown RBP17.07■□□□□ 0.32
SNX1-208ENST00000559844 TIMM29Q9BSF4 260 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 REXO4Q9GZR2 422 aaKnown RBP17.07■□□□□ 0.32
SNX1-208ENST00000559844 IRF2BPLQ9H1B7 796 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 FAM86C1Q9NVL1 165 aa17.07■□□□□ 0.32
SNX1-208ENST00000559844 TDRKHQ9Y2W6 561 aaKnown RBP17.07■□□□□ 0.32
SNX1-208ENST00000559844 DPPA5A6NC42 116 aa17.06■□□□□ 0.32
SNX1-208ENST00000559844 VGLL3A8MV65 326 aa17.06■□□□□ 0.32
SNX1-208ENST00000559844 SCAMP2O15127 329 aaKnown RBP17.06■□□□□ 0.32
SNX1-208ENST00000559844 TPST1O60507 370 aa17.06■□□□□ 0.32
SNX1-208ENST00000559844 ETHE1O95571 254 aa17.06■□□□□ 0.32
SNX1-208ENST00000559844 LDLRP01130 860 aa17.06■□□□□ 0.32
SNX1-208ENST00000559844 ANXA4P09525 319 aaPredicted RBP17.06■□□□□ 0.32
SNX1-208ENST00000559844 HOXB6P17509 224 aaKnown RBP17.06■□□□□ 0.32
SNX1-208ENST00000559844 PIK3CBP42338 1070 aa17.06■□□□□ 0.32
SNX1-208ENST00000559844 RAE1P78406 368 aaKnown RBP17.06■□□□□ 0.32
SNX1-208ENST00000559844 ABHD18Q0P651 414 aa17.06■□□□□ 0.32
SNX1-208ENST00000559844 LRRC74AQ0VAA2 488 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms