RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	RAP2C	Q9Y3L5	183 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	PCDHGA8	Q9Y5G5	932 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	B3GALT1	Q9Y5Z6	326 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545		A0A1W2PNU3	283 aa	Predicted RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	TRABD2B	A6NFA1	517 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	MAGEB17	A8MXT2	336 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	TMEM233	B4DJY2	109 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	TCP11X1	B4DZS4	312 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	SAP18	O00422	153 aa	Known RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	KLF11	O14901	512 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	P2RX6	O15547	441 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	SNN	O75324	88 aa	Predicted RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	KIAA0754	O94854	1291 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	PDYN	P01213	254 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	SERPINA6	P08185	405 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	FGF4	P08620	206 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	HBQ1	P09105	142 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	PTX3	P26022	381 aa	Predicted RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	ARRB2	P32121	409 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	MDH1	P40925	334 aa	Known RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	RPL14	P50914	215 aa	Known RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	RAP1GDS1	P52306	607 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	PLA2G16	P53816	162 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	ARSF	P54793	590 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	RAB8A	P61006	207 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	E2F2	Q14209	437 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	IMPG1	Q17R60	797 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	MUM1	Q2TAK8	710 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	PRTG	Q2VWP7	1150 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	MANEA	Q5SRI9	462 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	C10orf62	Q5T681	223 aa	Predicted RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	C1orf189	Q5VU69	101 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	FAM219B	Q5XKK7	198 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	FAM47E	Q6ZV65	393 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	TTLL10	Q6ZVT0	673 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	ABHD13	Q7L211	337 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	HOMEZ	Q8IX15	550 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	KIRREL3	Q8IZU9	778 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	RNF175	Q8N4F7	328 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF781	Q8N8C0	355 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	KCT2	Q8NC54	265 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	WDR20	Q8TBZ3	569 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	NT5C	Q8TCD5	201 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	CREB3L4	Q8TEY5	395 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF473	Q8WTR7	871 aa	Known RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	PMEPA1	Q969W9	287 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	TM4SF19	Q96DZ7	209 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	FAR2	Q96K12	515 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF285	Q96NJ3	590 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	TEFM	Q96QE5	360 aa	Known RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	F2RL3	Q96RI0	385 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	HBEGF	Q99075	208 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	SORT1	Q99523	831 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	SERPINI1	Q99574	410 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	DDA1	Q9BW61	102 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	ULBP3	Q9BZM4	244 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	C20orf27	Q9GZN8	174 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	NRSN2	Q9GZP1	204 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	REXO4	Q9GZR2	422 aa	Known RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	OR51B5	Q9H339	312 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	SYNPO2L	Q9H987	977 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	DMRT3	Q9NQL9	472 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	PFDN4	Q9NQP4	134 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	CUTC	Q9NTM9	273 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	PNPO	Q9NVS9	261 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	NMRK1	Q9NWW6	199 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	MARCO	Q9UEW3	520 aa	Predicted RBP	9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC12A4	Q9UP95	1085 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	SRPK3	Q9UPE1	567 aa		9.68	□□□□□ -0.86
CPSF7-221	ENST00000543545	FITM1	A5D6W6	292 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	LRIT2	A6NDA9	550 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	FOXE1	O00358	373 aa	Predicted RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	ERI3	O43414	337 aa	Known RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	CPNE3	O75131	537 aa	Known RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	SKAP2	O75563	359 aa	Predicted RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	STK17B	O94768	372 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	TIAF1	O95411	115 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	KLK3	P07288	261 aa	Predicted RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	VIM	P08670	466 aa	Known RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	LINC00032	P0C843	101 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF888	P0CJ79	500 aa	Predicted RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	AVPR1B	P47901	424 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	HTR6	P50406	440 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	GYS2	P54840	703 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	BTN3A2	P78410	334 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	BTK	Q06187	659 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	ABRAXAS2	Q15018	415 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	PDCD2	Q16342	344 aa	Predicted RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	TMEM35A	Q53FP2	167 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	SPDYA	Q5MJ70	313 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	DEPDC1	Q5TB30	811 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	YOD1	Q5VVQ6	348 aa	Predicted RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	GARNL3	Q5VVW2	1013 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	KHDRBS2	Q5VWX1	349 aa	Known RBP	9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	KANK2	Q63ZY3	851 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	TRIM40	Q6P9F5	258 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	ATG14	Q6ZNE5	492 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	VN1R5	Q7Z5H4	357 aa		9.67	□□□□□ -0.86
CPSF7-221	ENST00000543545	METTL27	Q8N6F8	245 aa	Predicted RBP	9.67	□□□□□ -0.86

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms