RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TMEM109Q9BVC6 243 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 NUDT9Q9BW91 350 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 PELI2Q9HAT8 420 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 GPRC5BQ9NZH0 403 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 TMEM216Q9P0N5 145 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 OPTCQ9UBM4 332 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 LGALS13Q9UHV8 139 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 GPN3Q9UHW5 284 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 SRPK3Q9UPE1 567 aa16.87■□□□□ 0.29
COL7A1-205ENST00000465238 TNPO3Q9Y5L0 923 aaKnown RBP16.87■□□□□ 0.29
COL7A1-205ENST00000465238 FEZF1A0PJY2 475 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 A6NL46 340 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 KLK8O60259 260 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 IGHEP01854 428 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 TAC1P20366 129 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 GNLYP22749 145 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 VARSP26640 1264 aaKnown RBP16.86■□□□□ 0.29
COL7A1-205ENST00000465238 OTX2P32243 289 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 UQCRFS1P47985 274 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 AGTR2P50052 363 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 ARSFP54793 590 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 DCDP81605 110 aaKnown RBP16.86■□□□□ 0.29
COL7A1-205ENST00000465238 SSPNQ14714 243 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 SETDB1Q15047 1291 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 PDK4Q16654 411 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 FAM214AQ32MH5 1076 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 KRT71Q3SY84 523 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 MLIPQ5VWP3 458 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 MRGPREQ86SM8 312 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 TMPRSS11BQ86T26 416 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 OR4K1Q8NGD4 311 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 ZNF285Q96NJ3 590 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 GBP5Q96PP8 586 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 OR2A5Q96R48 311 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 SMAD5Q99717 465 aaKnown RBP16.86■□□□□ 0.29
COL7A1-205ENST00000465238 AIF1LQ9BQI0 150 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 SLAMF7Q9NQ25 335 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 TXLNGQ9NUQ3 528 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 ANGPTL3Q9Y5C1 460 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 ICE1Q9Y2F5 2266 aa16.86■□□□□ 0.29
COL7A1-205ENST00000465238 KCNE1BA0A087WTH5 132 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 BLACEA4D250 179 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 K7EPI3 171 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 TXNDC9O14530 226 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 COPEO14579 308 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 OR1F1O43749 312 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 GLRA3O75311 464 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 C1GALT1C1LP0DN25 315 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 KRT4P19013 534 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 CXCR2P25025 360 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 FOLR3P41439 243 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 MEF2AQ02078 507 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-205ENST00000465238 INPP5JQ15735 1006 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-205ENST00000465238 FHL5Q5TD97 284 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 C1orf189Q5VU69 101 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 YOD1Q5VVQ6 348 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-205ENST00000465238 SLCO4C1Q6ZQN7 724 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 IQCKQ8N0W5 287 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 CSNK1A1LQ8N752 337 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 PTGR2Q8N8N7 351 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-205ENST00000465238 PNPLA2Q96AD5 504 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 PHF21BQ96EK2 531 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 FER1L6-AS2Q96M78 137 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 C5AR2Q9P296 337 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 IFT80Q9P2H3 777 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-205ENST00000465238 NDOR1Q9UHB4 597 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 GRID1Q9ULK0 1009 aa16.85■□□□□ 0.29
COL7A1-205ENST00000465238 PTRH2Q9Y3E5 179 aaKnown RBP16.85■□□□□ 0.29
COL7A1-205ENST00000465238 PCSK5Q92824 1860 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 TRBC2A0A5B9 178 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 HYKKA2RU49 373 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 FITM1A5D6W6 292 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 PEX12O00623 359 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 CTIFO43310 598 aaKnown RBP16.84■□□□□ 0.29
COL7A1-205ENST00000465238 KLHL41O60662 606 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 EPB42P16452 691 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 ALAS2P22557 587 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 ZNF844Q08AG5 666 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 PCBP2Q15366 365 aaKnown RBP eCLIP16.84■□□□□ 0.29
COL7A1-205ENST00000465238 BEND6Q5SZJ8 279 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-205ENST00000465238 VWA5B1Q5TIE3 1220 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 ATG9BQ674R7 924 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 SLC6A19Q695T7 634 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 SH2D5Q6ZV89 423 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 TTLL10Q6ZVT0 673 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 CROCCP2Q86T23 111 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 TRABD2AQ86V40 505 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 C4orf33Q8N1A6 199 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 TEX9Q8N6V9 391 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 RBMXL3Q8N7X1 1067 aaKnown RBP16.84■□□□□ 0.29
COL7A1-205ENST00000465238 Q8NA96 180 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 MFSD9Q8NBP5 474 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 CLEC1AQ8NC01 280 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 OR2Y1Q8NGV0 311 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 ENAMQ9NRM1 1142 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 CUTCQ9NTM9 273 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 DHCR7Q9UBM7 475 aaKnown RBP16.84■□□□□ 0.29
COL7A1-205ENST00000465238 ASB1Q9Y576 335 aa16.84■□□□□ 0.29
COL7A1-205ENST00000465238 STX16-NPEPL1H3BU86 382 aa16.83■□□□□ 0.28
COL7A1-205ENST00000465238 STX16O14662 325 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms