RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 NUDCD3Q8IVD9 361 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 KATNAL2Q8IYT4 538 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 EID3Q8N140 333 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SYT14Q8NB59 555 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PRPF31Q8WWY3 499 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ZCCHC14Q8WYQ9 949 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 DVL3Q92997 716 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FUBP1Q96AE4 644 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 AP2M1Q96CW1 435 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SHISA4Q96DD7 197 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 CCDC120Q96HB5 630 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PRMT6Q96LA8 375 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 C12orf66Q96MD2 445 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF48Q96MX3 618 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SERPINB12Q96P63 405 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 SYT3Q9BQG1 590 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TMEM175Q9BSA9 504 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TUBGCP2Q9BSJ2 902 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 NLNQ9BYT8 704 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PRRG3Q9BZD7 231 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 C7orf69Q9H7B7 122 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MAN2C1Q9NTJ4 1040 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 BARHL2Q9NY43 387 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 KCND2Q9NZV8 630 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 MID2Q9UJV3 735 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ACSL6Q9UKU0 697 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 COPS3Q9UNS2 423 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 FZD1Q9UP38 647 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 ERVW-1Q9UQF0 538 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PSAT1Q9Y617 370 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 TEX264Q9Y6I9 313 aa4.64□□□□□ -1.67
CCDC88A-209ENST00000456975 PFASO15067 1338 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 RPTORQ8N122 1335 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 A0A1W2PQ09 198 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ZC3H12DA2A288 527 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 SIGLEC16A6NMB1 481 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 MEI4A8MW99 385 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 SUPT3HB4E1H0 165 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 PYCARD-AS1I3L0S3 204 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC30A4O14863 429 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 HNRNPDLO14979 420 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF623O75123 536 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ECI2O75521 394 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 KAT7O95251 611 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 MATN4O95460 622 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 LY86O95711 162 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ABHD16AO95870 558 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 AMHP03971 560 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 PCCBP05166 539 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 CDK1P06493 297 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 PROS1P07225 676 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 GUSBP08236 651 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ANXA5P08758 320 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 RBP1P09455 135 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 NQO2P16083 231 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF10P21506 573 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 MAGEB1P43366 347 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 CAPZBP47756 277 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 DGKQP52824 942 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 CXCR4P61073 352 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 VSNL1P62760 191 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 PTK6Q13882 451 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ADGRE1Q14246 886 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 TRAM2Q15035 370 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 USP41Q3LFD5 358 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 LRRC38Q5VT99 294 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 RAP1GAP2Q684P5 730 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 TANGO2Q6ICL3 276 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC25A25Q6KCM7 469 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 PRSS57Q6UWY2 283 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 TMEM108Q6UXF1 575 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 CLEC10AQ8IUN9 316 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ARMC8Q8IUR7 673 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 UNC5BQ8IZJ1 945 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 PQLC1Q8N2U9 271 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 C1orf52Q8N6N3 182 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 LRRC17Q8N6Y2 441 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 NUDT10Q8NFP7 164 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 OR4C15Q8NGM1 316 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 RNASE11Q8TAA1 199 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 LRRC20Q8TCA0 184 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF398Q8TD17 642 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 LARP4BQ92615 738 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 RILPQ96NA2 401 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF385AQ96PM9 386 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 HSD17B14Q9BPX1 270 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 TEKT3Q9BXF9 490 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 OR2B2Q9GZK3 357 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ACTR6Q9GZN1 396 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 TOLLIPQ9H0E2 274 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 SMYD3Q9H7B4 428 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF302Q9NR11 478 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 PCDHB16Q9NRJ7 776 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC38A7Q9NVC3 462 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 DNAJC17Q9NVM6 304 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 HIF1ANQ9NWT6 349 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 MORF4L1Q9UBU8 362 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF212Q9UDV6 495 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 DNAJC12Q9UKB3 198 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms