RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 SLC22A7Q9Y694 548 aa18.02■□□□□ 0.48
SF3A1-202ENST00000411423 SHANK1Q9Y566 2161 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 IGHV3-20A0A0C4DH32 117 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 SLC35G6P0C7Q6 338 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 ZNF888P0CJ79 500 aaPredicted RBP18.01■□□□□ 0.47
SF3A1-202ENST00000411423 STX2P32856 288 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 SPRP35270 261 aaPredicted RBP18.01■□□□□ 0.47
SF3A1-202ENST00000411423 XCR1P46094 333 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 OLR1P78380 273 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 BMPR2Q13873 1038 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 SLMAPQ14BN4 828 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 INPP5JQ15735 1006 aaPredicted RBP18.01■□□□□ 0.47
SF3A1-202ENST00000411423 CRB2Q5IJ48 1285 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 SLCO4C1Q6ZQN7 724 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 CUZD1Q86UP6 607 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 HPS6Q86YV9 775 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 CREB3L4Q8TEY5 395 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 MRRFQ96E11 262 aaKnown RBP18.01■□□□□ 0.47
SF3A1-202ENST00000411423 SLC6A16Q9GZN6 736 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 ANKHQ9HCJ1 492 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 IGSF5Q9NSI5 407 aa18.01■□□□□ 0.47
SF3A1-202ENST00000411423 ASH1LQ9NR48 2969 aaKnown RBP18.01■□□□□ 0.47
SF3A1-202ENST00000411423 NSG1A0A0A6YYJ2 146 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 GALR3O60755 368 aaPredicted RBP18■□□□□ 0.47
SF3A1-202ENST00000411423 SERPIND1P05546 499 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 SMIM10L1P0DMW3 83 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 EPORP19235 508 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 GGT5P36269 586 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 HSPA7P48741 367 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 HNMTP50135 292 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 IRF9Q00978 393 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 PWP1Q13610 501 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 ADNP2Q6IQ32 1131 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 Q6ZS92 163 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 NDUFAF7Q7L592 441 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 GPSM1Q86YR5 675 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18■□□□□ 0.47
SF3A1-202ENST00000411423 UTP15Q8TED0 518 aaKnown RBP18■□□□□ 0.47
SF3A1-202ENST00000411423 KIAA1191Q96A73 305 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 PEX11GQ96HA9 241 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 SMIM10Q96HG1 83 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 CYTH2Q99418 400 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 ZNF700Q9H0M5 742 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 LANCL2Q9NS86 450 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 KCNE2Q9Y6J6 123 aa18■□□□□ 0.47
SF3A1-202ENST00000411423 TBX6O95947 436 aaPredicted RBP17.99■□□□□ 0.47
SF3A1-202ENST00000411423 ALPPP05187 535 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 PRR35P0CG20 571 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 C1GALT1C1LP0DN25 315 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 AHRP35869 848 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 HNF4AP41235 474 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 RAB8AP61006 207 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 ATP6V0D1P61421 351 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 ILF2Q12905 390 aaKnown RBP17.99■□□□□ 0.47
SF3A1-202ENST00000411423 RBBP5Q15291 538 aaKnown RBP17.99■□□□□ 0.47
SF3A1-202ENST00000411423 DEFB134Q4QY38 66 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 VN1R5Q7Z5H4 357 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 ISCA2Q86U28 154 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 PDPRQ8NCN5 879 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 BRIX1Q8TDN6 353 aaKnown RBP17.99■□□□□ 0.47
SF3A1-202ENST00000411423 EXT2Q93063 718 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 IMMP1LQ96LU5 166 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 ATOH8Q96SQ7 321 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 WDR77Q9BQA1 342 aaPredicted RBP17.99■□□□□ 0.47
SF3A1-202ENST00000411423 AIF1LQ9BQI0 150 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 FAM129AQ9BZQ8 928 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 ALG9Q9H6U8 611 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 SLAMF7Q9NQ25 335 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 PTBP2Q9UKA9 531 aaKnown RBP17.99■□□□□ 0.47
SF3A1-202ENST00000411423 B3GNT3Q9Y2A9 372 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 NTNG1Q9Y2I2 539 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 NBASA2RRP1 2371 aa17.99■□□□□ 0.47
SF3A1-202ENST00000411423 FLNCQ14315 2725 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 CLEC18AA5D8T8 446 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 CDC123O75794 336 aaPredicted RBP17.98■□□□□ 0.47
SF3A1-202ENST00000411423 IPO13O94829 963 aaKnown RBP17.98■□□□□ 0.47
SF3A1-202ENST00000411423 C8orf89P0DMQ9 161 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 ITGAMP11215 1152 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 ALOX12P18054 663 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 CD22P20273 847 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 GNLYP22749 145 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 SOX11P35716 441 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 RHAGQ02094 409 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 CDC16Q13042 620 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 NAB1Q13506 487 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 SLBPQ14493 270 aaKnown RBP eCLIP17.98■□□□□ 0.47
SF3A1-202ENST00000411423 MINDY4Q4G0A6 757 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 MROH9Q5TGP6 573 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 AGAP7PQ5VUJ5 663 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 B3GNTL1Q67FW5 361 aaPredicted RBP17.98■□□□□ 0.47
SF3A1-202ENST00000411423 CLEC18BQ6UXF7 455 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 LINC00696Q6ZRV3 163 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 CENPLQ8N0S6 344 aaPredicted RBP17.98■□□□□ 0.47
SF3A1-202ENST00000411423 CLEC18CQ8NCF0 446 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 KCTD4Q8WVF5 259 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 TSLPQ969D9 159 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 NXNL1Q96CM4 212 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 SNRNP40Q96DI7 357 aaKnown RBP17.98■□□□□ 0.47
SF3A1-202ENST00000411423 AGAP4Q96P64 663 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 CDC42EP4Q9H3Q1 356 aaKnown RBP17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms