RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 RDH14Q9HBH5 336 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 MBNL1Q9NR56 388 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 OR51B4Q9Y5P0 310 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 LYVE1Q9Y5Y7 322 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 FAM20BO75063 409 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 UGT2B17O75795 530 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 ARHGEF15O94989 841 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 C1orf105O95561 183 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 KLK3P07288 261 aaPredicted RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 F3P13726 295 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 IL7RP16871 459 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 AGXTP21549 392 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 DUSP3P51452 185 aaPredicted RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 USP30Q70CQ3 517 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 FAM160A2Q8N612 972 aaPredicted RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 PDPRQ8NCN5 879 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 OR8K5Q8NH50 307 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 POP5Q969H6 163 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 PMEPA1Q969W9 287 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 LYSMD1Q96S90 227 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 TM7SF3Q9NS93 570 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 POM121BA6NF01 834 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 H0Y8X5 98 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 TP73O15350 636 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 TBX10O75333 385 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CTSLP07711 333 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 PAICSP22234 425 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 KCNC1P48547 511 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 KHKP50053 298 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 METAP1P53582 386 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 EEFSECP57772 596 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 ZXDBP98169 803 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 Q6ZS52 159 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 TMEM126BQ8IUX1 230 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 VRK3Q8IV63 474 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CCDC116Q8IYX3 515 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 OR7A2PQ8NGA2 310 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 ZNF563Q8TA94 476 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 PDLIM5Q96HC4 596 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 DGAT2Q96PD7 388 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 KCNC2Q96PR1 638 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 FGF22Q9HCT0 170 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 NEUROD4Q9HD90 331 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 GPRC5BQ9NZH0 403 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 SEC16AO15027 2179 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 GVINP1Q7Z2Y8 2422 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 BTN3A3O00478 584 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 BCAT2O15382 392 aaPredicted RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 FZD6O60353 706 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 OR2B3O76000 313 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 WFS1O76024 890 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CLPTM1O96005 669 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 HSMCR30P0CW71 290 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CYP4B1P13584 511 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 PSMB5P28074 263 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CCT3P49368 545 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 CRISP3P54108 245 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 UGT2B15P54855 530 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 ADARP55265 1226 aaKnown RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 DSTNP60981 165 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 YPEL5P62699 121 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 ACVR1Q04771 509 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 EPS8Q12929 822 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 SLAMF1Q13291 335 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 KANK2Q63ZY3 851 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 ALG1LQ6GMV1 187 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 C6orf89Q6UWU4 347 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CEACAM20Q6UY09 585 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 RNF44Q7L0R7 432 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 COMMD6Q7Z4G1 85 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CLEC14AQ86T13 490 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 CADM2Q8N3J6 435 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 SFRP1Q8N474 314 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 NATD1Q8N6N6 113 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 APIPQ96GX9 242 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 INSM2Q96T92 566 aaPredicted RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 C6orf106Q9H6K1 298 aaPredicted RBP8.75□□□□□ -1.01
LIG4-202ENST00000405925 CALML5Q9NZT1 146 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 GTF2A1LQ9UNN4 478 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 GMPPBQ9Y5P6 360 aa8.75□□□□□ -1.01
LIG4-202ENST00000405925 RLFQ13129 1914 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 KIR2DS5A0A0G2JLQ3 304 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 A0A0G2JNG1 304 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 C17orf113A0A1B0GUU1 675 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 KIR2DS3K7RE56 304 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 REM1O75628 298 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 SLC25A12O75746 678 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 UBXN7O94888 489 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 BMP7P18075 431 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 NUP107P57740 925 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 MTAPQ13126 283 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 SIM2Q14190 667 aaPredicted RBP8.74□□□□□ -1.01
LIG4-202ENST00000405925 KIR2DS5Q14953 304 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 TMEM215Q68D42 235 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 GRHL2Q6ISB3 625 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 TMEM214Q6NUQ4 689 aaKnown RBP8.74□□□□□ -1.01
LIG4-202ENST00000405925 KIAA1211LQ6NV74 962 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 ADAMTSL4Q6UY14 1074 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 ZSWIM9Q86XI8 627 aa8.74□□□□□ -1.01
LIG4-202ENST00000405925 ARMC8Q8IUR7 673 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms