RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SP140Q13342 867 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 C10orf62Q5T681 223 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 UMODL1-AS1Q8N2C9 162 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 FBXO15Q8NCQ5 510 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 FAM46DQ8NEK8 389 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 OR8J3Q8NGG0 315 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 TBL1XR1Q9BZK7 514 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 LYARQ9NX58 379 aaKnown RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 MTMR11A4FU01 709 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ARVCFO00192 962 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 PLOD2O00469 737 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 DNAJB5O75953 348 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 PABPC4LP0CB38 370 aaKnown RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 C7P10643 843 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 HAPLN1P10915 354 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 GJA1P17302 382 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 OR12D2P58182 307 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 RPS13P62277 151 aaKnown RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 PHC1P78364 1004 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF763Q0D2J5 394 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ATG9BQ674R7 924 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 SHQ1Q6PI26 577 aaKnown RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 C14orf80Q86SX3 495 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 SLC22A15Q8IZD6 547 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 WDTC1Q8N5D0 677 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 IMP4Q96G21 291 aaKnown RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 CD180Q99467 661 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 MMP27Q9H306 513 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 B4GALT6Q9UBX8 382 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 COL2A1P02458 1487 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 TOGARAM1Q9Y4F4 1720 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF8P17098 575 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 TM4SF4P48230 202 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ARFRP1Q13795 201 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 CEACAM7Q14002 265 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF792Q3KQV3 632 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ANKDD1AQ495B1 522 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 C6orf141Q5SZD1 244 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 THOC7Q6I9Y2 204 aaKnown RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 C22orf39Q6P5X5 142 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 C17orf99Q6UX52 265 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 OR8H3Q8N146 312 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ARMC10Q8N2F6 343 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 ZNF366Q8N895 744 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 OR56A1Q8NGH5 318 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 SLC5A11Q8WWX8 675 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 FCRL3Q96P31 734 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-203ENST00000372407 KCNH6Q9H252 994 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 MGAT4BQ9UQ53 548 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 CLCA3PQ9Y6N3 262 aa11.07□□□□□ -0.64
PTPRF-203ENST00000372407 A0A0J9YVX5 310 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 CH25HO95992 272 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 IFNA7P01567 189 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 HK1P19367 917 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 IVDP26440 423 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 HTR1EP28566 365 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ECHS1P30084 290 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 BMP8BP34820 402 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 RBM34P42696 430 aaKnown RBP11.06□□□□□ -0.64
PTPRF-203ENST00000372407 AGTR2P50052 363 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 DGKEP52429 567 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ARPC4P59998 168 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 LAPTM4AQ15012 233 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 C2orf27AQ580R0 203 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ENPP7Q6UWV6 458 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 Q6ZVL8 140 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 BMP8AQ7Z5Y6 402 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 TMCO2Q7Z6W1 182 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-203ENST00000372407 SLC15A3Q8IY34 581 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ZDHHC14Q8IZN3 488 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 MARVELD2Q8N4S9 558 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 TCEANCQ8N8B7 351 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 OR2L3Q8NG85 312 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 CCDC115Q96NT0 180 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ARHGAP39Q9C0H5 1083 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 SLC6A15Q9H2J7 730 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 POLMQ9NP87 494 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-203ENST00000372407 TDP1Q9NUW8 608 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 SLX4Q8IY92 1834 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 METTL21EPA6NDL7 271 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 SOX14O95416 240 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 SLC35E2BP0CK96 405 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 BDKRB1P46663 353 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 TMBIM6P55061 237 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 PITX1P78337 314 aaPredicted RBP11.06□□□□□ -0.64
PTPRF-203ENST00000372407 MAB21L1Q13394 359 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 LASP1Q14847 261 aaKnown RBP11.06□□□□□ -0.64
PTPRF-203ENST00000372407 PTGR1Q14914 329 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 ATP6AP1Q15904 470 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 C4orf46Q504U0 113 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 C15orf39Q6ZRI6 1047 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 DCUN1D3Q8IWE4 304 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 CHCHD4Q8N4Q1 142 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 PXYLP1Q8TE99 480 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 DPAGT1Q9H3H5 408 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 CDC14AQ9UNH5 594 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 MRPS17Q9Y2R5 130 aaKnown RBP11.06□□□□□ -0.64
PTPRF-203ENST00000372407 FAM72CH0Y354 149 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 NDUFS4O43181 175 aa11.06□□□□□ -0.64
PTPRF-203ENST00000372407 SOCS5O75159 536 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms