RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ABCE1P61221 599 aaKnown RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 RPS18P62269 152 aaKnown RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 DCDP81605 110 aaKnown RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 KCNC4Q03721 635 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 SP140Q13342 867 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 RCN2Q14257 317 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 NAA25Q14CX7 972 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 NCF4Q15080 339 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 PFKFB4Q16877 469 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 PTCHD3Q3KNS1 767 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 FBXO48Q5FWF7 155 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 ZNF678Q5SXM1 525 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 ZNF385CQ66K41 422 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 LCN10Q6JVE6 187 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 MBOAT1Q6ZNC8 495 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 UBE2R2Q712K3 238 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 RPS27LQ71UM5 84 aaKnown RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 PTRH1Q86Y79 214 aaKnown RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 SLC22A9Q8IVM8 553 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 MCATQ8IVS2 390 aaKnown RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 PDPRQ8NCN5 879 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 ADAMTS17Q8TE56 1095 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 ZNF473Q8WTR7 871 aaKnown RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 ASB11Q8WXH4 323 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 CCDC126Q96EE4 140 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 L3HYPDHQ96EM0 354 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 C7orf26Q96N11 449 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 IP6K3Q96PC2 410 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 IL17FQ96PD4 163 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 CCT8L2Q96SF2 557 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 NDC1Q9BTX1 674 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 GSTO2Q9H4Y5 243 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 ZNF71Q9NQZ8 489 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 TXLNGQ9NUQ3 528 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 CD274Q9NZQ7 290 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 PDE10AQ9Y233 779 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 ASB1Q9Y576 335 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 KLK4Q9Y5K2 254 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 KRT87PA6NCN2 255 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 ARHGEF33A8MVX0 844 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 STX16-NPEPL1H3BU86 382 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 GFYI3L273 518 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 STX16O14662 325 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 NPHS1O60500 1241 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 SRPX2O60687 465 aaPredicted RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 PSIP1O75475 530 aaKnown RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 FAM107AO95990 144 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 CHRNGP07510 517 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 RPS17P08708 135 aaKnown RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 GRK2P25098 689 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 EEF1DP29692 281 aaKnown RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 HSD17B2P37059 387 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 CASRP41180 1078 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 SLC1A6P48664 564 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 AGTR2P50052 363 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 ASPHQ12797 758 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 SF3A3Q12874 501 aaKnown RBP eCLIP12.09□□□□□ -0.473e-6■■■□□ 19.1
PNKP-217ENST00000625216 KLRB1Q12918 225 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 ARHGAP19Q14CB8 494 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 SETDB1Q15047 1291 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 CYP2A13Q16696 494 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 C18orf21Q32NC0 220 aaPredicted RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 UNC50Q53HI1 259 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 TCTE1Q5JU00 501 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 YOD1Q5VVQ6 348 aaPredicted RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 FIGLAQ6QHK4 219 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 FAM198BQ6UWH4 519 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 FRMD7Q6ZUT3 714 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 C2orf73Q8N5S3 287 aaPredicted RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 ZNF655Q8N720 491 aaPredicted RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 CCNYL1Q8N7R7 359 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 OR9A1PQ8NGU1 263 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 BCAS4Q8TDM0 211 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 SREK1Q8WXA9 508 aaKnown RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 GBP5Q96PP8 586 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 TMEM79Q9BSE2 394 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 NSRP1Q9H0G5 558 aaKnown RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 ING2Q9H160 280 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 IRAK4Q9NWZ3 460 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 GPN3Q9UHW5 284 aaPredicted RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 TMCO1Q9UM00 188 aa12.09□□□□□ -0.47
PNKP-217ENST00000625216 PCDHGA9Q9Y5G4 932 aaKnown RBP12.09□□□□□ -0.47
PNKP-217ENST00000625216 ZNF839A8K0R7 811 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 SLC16A5O15375 505 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 TAPBPO15533 448 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 HCRTR1O43613 425 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 IGHEP01854 428 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 CATP04040 527 aaKnown RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 ENO2P09104 434 aaPredicted RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 PIM1P11309 404 aaPredicted RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 IMPDH1P20839 514 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 GRIA3P42263 894 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 ALDH18A1P54886 795 aaKnown RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 RRADP55042 308 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 HERVK_113P63132 956 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 CDKL1Q00532 357 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 IL10RAQ13651 578 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 SSPNQ14714 243 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 GRM7Q14831 915 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms