RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 OR52K1Q8NGK4 314 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 PEX13Q92968 403 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 MBD6Q96DN6 1003 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 CHP1Q99653 195 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 SLC6A16Q9GZN6 736 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 LIME1Q9H400 295 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 FAM114A2Q9NRY5 505 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 PLSCR2Q9NRY7 297 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 CATSPERZQ9NTU4 200 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 ABHD10Q9NUJ1 306 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 PLEKHA6Q9Y2H5 1048 aa9.51□□□□□ -0.89
TRIM28-210ENST00000597618 R3HDM2Q9Y2K5 976 aaKnown RBP9.51□□□□□ -0.89
TRIM28-210ENST00000597618 OR2W5A6NFC9 320 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 ERI2A8K979 691 aaKnown RBP9.5□□□□□ -0.89
TRIM28-210ENST00000597618 ARHGEF33A8MVX0 844 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 MAGEB17A8MXT2 336 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 SGK494L7N484 410 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 FCHO1O14526 889 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 KIF5CO60282 957 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 MATN4O95460 622 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 TPM1P09493 284 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 IL1RNP18510 177 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 IL10P22301 178 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 RPS3P23396 243 aaKnown RBP eCLIP9.5□□□□□ -0.891e-8■□□□□ 9.8
TRIM28-210ENST00000597618 ADRA1DP25100 572 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 RFC3P40938 356 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 BCL6P41182 706 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 CETN2P41208 172 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 PNLIPRP1P54315 467 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 NUP107P57740 925 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 OR4D2P58180 307 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 SNRPNP63162 240 aaKnown RBP9.5□□□□□ -0.89
TRIM28-210ENST00000597618 MPP1Q00013 466 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 RHAGQ02094 409 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 SKOR2Q2VWA4 1001 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-210ENST00000597618 MEI1Q5TIA1 1274 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 PRSS41Q7RTY9 318 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 LDB1Q86U70 411 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-210ENST00000597618 ZZZ3Q8IYH5 903 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 MPP5Q8N3R9 675 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 ZFP62Q8NB50 900 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-210ENST00000597618 PLPP5Q8NEB5 264 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 OR5M3Q8NGP4 307 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 C16orf52Q8NHV5 167 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 ELP5Q8TE02 316 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 OR1F2PQ96R84 312 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 PANX2Q96RD6 677 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 GPATCH1Q9BRR8 931 aaKnown RBP9.5□□□□□ -0.89
TRIM28-210ENST00000597618 REPIN1Q9BWE0 567 aaKnown RBP9.5□□□□□ -0.89
TRIM28-210ENST00000597618 P2RY12Q9H244 342 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 ANKHQ9HCJ1 492 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 RASSF1Q9NS23 344 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 FN1P02751 2386 aaKnown RBP9.5□□□□□ -0.89
TRIM28-210ENST00000597618 ATRQ13535 2644 aa9.5□□□□□ -0.89
TRIM28-210ENST00000597618 GOLGA6L19H0YKK7 550 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 CD3EAPO15446 510 aaKnown RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 PEX1O43933 1283 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 CDC123O75794 336 aaPredicted RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 STATHP02808 62 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 CATP04040 527 aaKnown RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 ADSLP30566 484 aaPredicted RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 PEX19P40855 299 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 EIF3BP55884 814 aaKnown RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 MLF1P58340 268 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 RPS15AP62244 130 aaKnown RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 EMC4Q5J8M3 183 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 TMEM214Q6NUQ4 689 aaKnown RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 PAOXQ6QHF9 649 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 ARSKQ6UWY0 536 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 PAMR1Q6UXH9 720 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 PPP1R21Q6ZMI0 780 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 PLD3Q8IV08 490 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 SULF2Q8IWU5 870 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 SHISA5Q8N114 240 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 KIF2BQ8N4N8 673 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 GOT1L1Q8NHS2 421 aaPredicted RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 TSLPQ969D9 159 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 C18orf12Q96KH6 178 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 ZNF778Q96MU6 729 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 RBCK1Q9BYM8 510 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 MARCH4Q9P2E8 410 aaPredicted RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 TSR3Q9UJK0 312 aaKnown RBP9.49□□□□□ -0.89
TRIM28-210ENST00000597618 TCAF1Q9Y4C2 921 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 PCDHA3Q9Y5H8 950 aa9.49□□□□□ -0.89
TRIM28-210ENST00000597618 KCNE1BA0A087WTH5 132 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 GOLGA6L9A6NEM1 432 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 FIGNL2A6NMB9 653 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 SMAPO00193 183 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 MFAP3LO75121 409 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 RDH16O75452 317 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 PSIP1O75475 530 aaKnown RBP9.48□□□□□ -0.89
TRIM28-210ENST00000597618 NDUFS3O75489 264 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 PDE9AO76083 593 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 SLC16A8O95907 504 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 PTMAP06454 111 aaKnown RBP9.48□□□□□ -0.89
TRIM28-210ENST00000597618 JAK1P23458 1154 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 HRH2P25021 359 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 ACVR2AP27037 513 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 KIR2DL3P43628 341 aa9.48□□□□□ -0.89
TRIM28-210ENST00000597618 ZFP36L2P47974 494 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms