RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 CCDC197Q8NCU1 140 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 FAM46DQ8NEK8 389 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 OR6C4Q8NGE1 309 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 OR56A3Q8NH54 315 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 CEP70Q8NHQ1 597 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 LMX1AQ8TE12 382 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 TRPC4APQ8TEL6 797 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 ZNF483Q8TF39 744 aaPredicted RBP4.84□□□□□ -1.63
VTI1B-202ENST00000553619 NAT14Q8WUY8 206 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 SMPDL3AQ92484 453 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PIGKQ92643 395 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 UBE2E3Q969T4 207 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 REPS1Q96D71 796 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PEX11GQ96HA9 241 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 SEC16BQ96JE7 1060 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 TMEM237Q96Q45 408 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PKP4Q99569 1192 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 ORAI3Q9BRQ5 295 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 TUBB6Q9BUF5 446 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 NUSAP1Q9BXS6 441 aaKnown RBP4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PITHD1Q9GZP4 211 aaPredicted RBP4.84□□□□□ -1.63
VTI1B-202ENST00000553619 FAM107BQ9H098 131 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 KLHL25Q9H0H3 589 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 GSTO2Q9H4Y5 243 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 KIR3DX1Q9H7L2 352 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 IPPKQ9H8X2 491 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 MID1IP1Q9NPA3 183 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 CCDC177Q9NQR7 707 aaPredicted RBP4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PRDM8Q9NQV8 689 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 TM7SF3Q9NS93 570 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 POT1Q9NUX5 634 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 IMP3Q9NV31 184 aaKnown RBP4.84□□□□□ -1.63
VTI1B-202ENST00000553619 FGFR1OP2Q9NVK5 253 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 NMRK1Q9NWW6 199 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 GEMIN8Q9NWZ8 242 aaKnown RBP4.84□□□□□ -1.63
VTI1B-202ENST00000553619 TAAR2Q9P1P5 351 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 STOX2Q9P2F5 926 aaPredicted RBP4.84□□□□□ -1.63
VTI1B-202ENST00000553619 GULP1Q9UBP9 304 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 CGGBP1Q9UFW8 167 aaPredicted RBP4.84□□□□□ -1.63
VTI1B-202ENST00000553619 HAO1Q9UJM8 370 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PILRBQ9UKJ0 227 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 SNX6Q9UNH7 406 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PLA2G2DQ9UNK4 145 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PSMD13Q9UNM6 376 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 ARL2BPQ9Y2Y0 163 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 TRAF6Q9Y4K3 522 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PCDHGA5Q9Y5G8 931 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 ENTPD2Q9Y5L3 495 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 USH1CQ9Y6N9 552 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 PMF1-BGLAPU3KQ54 211 aa4.84□□□□□ -1.63
VTI1B-202ENST00000553619 GON4LQ3T8J9 2241 aa4.84□□□□□ -1.64
VTI1B-202ENST00000553619 SPAG17Q6Q759 2223 aa4.84□□□□□ -1.64
VTI1B-202ENST00000553619 PI4KAP42356 2102 aa4.84□□□□□ -1.64
VTI1B-202ENST00000553619 ARHGEF17Q96PE2 2063 aaPredicted RBP4.84□□□□□ -1.64
VTI1B-202ENST00000553619 FANCMQ8IYD8 2048 aa4.84□□□□□ -1.64
VTI1B-202ENST00000553619 A0A1B0GVT2 93 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 ANKRD34BA5PLL1 514 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 E7ENX8 843 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 LMO7DNF2Z398 122 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 SLC28A1O00337 649 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 MATN2O00339 956 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 EBAG9O00559 213 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 E2F3O00716 465 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 FFAR3O14843 346 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 AZIN1O14977 448 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 HDAC3O15379 428 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 TAPBPO15533 448 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 ITM2AO43736 263 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 CCDC22O60826 627 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 ULK1O75385 1050 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 PIAS2O75928 621 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 DCTN3O75935 186 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 SIX3O95343 332 aaPredicted RBP4.83□□□□□ -1.64
VTI1B-202ENST00000553619 CLDN9O95484 217 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 CER1O95813 267 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 KRT6AP02538 564 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 KRT6BP04259 564 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 WNT1P04628 370 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 C1GALT1C1LP0DN25 315 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 KITP10721 976 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 AK4P27144 223 aaPredicted RBP4.83□□□□□ -1.64
VTI1B-202ENST00000553619 IMPA1P29218 277 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 CMPK1P30085 196 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 GRK3P35626 688 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 CASP2P42575 452 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 BDKRB1P46663 353 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 SLC6A12P48065 614 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 KRT6CP48668 564 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 RAB28P51157 221 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 CDH13P55290 713 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 ABATP80404 500 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 IRF8Q02556 426 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 TAP2Q03519 686 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 LCP2Q13094 533 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 PRKG2Q13237 762 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 MAD2L1Q13257 205 aaPredicted RBP4.83□□□□□ -1.64
VTI1B-202ENST00000553619 TSTA3Q13630 321 aaPredicted RBP4.83□□□□□ -1.64
VTI1B-202ENST00000553619 CLCA4Q14CN2 919 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 TBCCQ15814 346 aa4.83□□□□□ -1.64
VTI1B-202ENST00000553619 CYP2A13Q16696 494 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms