RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ZCCHC7Q8N3Z6 543 aaKnown RBP16.28■□□□□ 0.2
USP28-208ENST00000540438 RBM4BQ9BQ04 359 aaKnown RBP16.28■□□□□ 0.2
USP28-208ENST00000540438 RBM4Q9BWF3 364 aaKnown RBP16.28■□□□□ 0.2
USP28-208ENST00000540438 FUNDC2Q9BWH2 189 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 SLC6A17Q9H1V8 727 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 C11orf49Q9H6J7 331 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 CTPS2Q9NRF8 586 aa16.28■□□□□ 0.2
USP28-208ENST00000540438 DYTNA2CJ06 578 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 NPC1O15118 1278 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 SPINT1O43278 529 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 SLCO2B1O94956 709 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 ANGPTL1O95841 491 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 C6P13671 934 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 NPPBP16860 134 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 PTNP21246 168 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 MMP12P39900 470 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 ISL1P61371 349 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 VBP1P61758 197 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 SYT16Q17RD7 645 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 RPS26P11Q5JNZ5 115 aaPredicted RBP16.27■□□□□ 0.2
USP28-208ENST00000540438 TMEM236Q5W0B7 351 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 ATG9BQ674R7 924 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 OR2T5Q6IEZ7 315 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 ZNF773Q6PK81 442 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 AHSA2Q719I0 299 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 COMMD6Q7Z4G1 85 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 MEX3DQ86XN8 651 aaKnown RBP16.27■□□□□ 0.2
USP28-208ENST00000540438 OR2T29Q8NH02 315 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 ALOXE3Q9BYJ1 711 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 ROGDIQ9GZN7 287 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 TPST2O60704 377 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 PRPS1L1P21108 318 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 HNMTP50135 292 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 ABHD18Q0P651 414 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 TNFAIP8L2Q6P589 184 aaPredicted RBP16.27■□□□□ 0.2
USP28-208ENST00000540438 OR5K1Q8NHB7 308 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 NFKBIDQ8NI38 313 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 DOK4Q8TEW6 326 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 RAB8BQ92930 207 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 GPATCH2Q9NW75 528 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 GMPPBQ9Y5P6 360 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 KCNE2Q9Y6J6 123 aa16.27■□□□□ 0.2
USP28-208ENST00000540438 MYO10Q9HD67 2058 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 SH3BP5O60239 455 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 SOD1P00441 154 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 EPHX1P07099 455 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 GSTM1P09488 218 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 POU1F1P28069 291 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 GSTM4Q03013 218 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 ILF2Q12905 390 aaKnown RBP16.27■□□□□ 0.19
USP28-208ENST00000540438 GET4Q7L5D6 327 aaPredicted RBP16.27■□□□□ 0.19
USP28-208ENST00000540438 TECPR1Q7Z6L1 1165 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 RNF130Q86XS8 419 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 GTPBP3Q969Y2 492 aaKnown RBP16.27■□□□□ 0.19
USP28-208ENST00000540438 FOPNLQ96NB1 174 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 CUEDC1Q9NWM3 386 aaPredicted RBP16.27■□□□□ 0.19
USP28-208ENST00000540438 ORC6Q9Y5N6 252 aa16.27■□□□□ 0.19
USP28-208ENST00000540438 FRYLO94915 3013 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 HEPACAM2A8MVW5 462 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 PCDH8O95206 1070 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 FABP3P05413 133 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 MAT2AP31153 395 aaKnown RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 NAA20P61599 178 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 CDK5R2Q13319 367 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 LRIF1Q5T3J3 769 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 ERAP2Q6P179 960 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 TTC29Q8NA56 475 aaPredicted RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 ZNF540Q8NDQ6 660 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 UTP15Q8TED0 518 aaKnown RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 SMG7Q92540 1137 aaKnown RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 CCDC115Q96NT0 180 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 ZSCAN5AQ9BUG6 496 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 THUMPD1Q9NXG2 353 aaKnown RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 PPIL1Q9Y3C6 166 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 PLEKHM1Q9Y4G2 1056 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 TRBV23OR9-2A0A075B6M9 112 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 FAM220BPB1ANY3 271 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 NOL3O60936 208 aaKnown RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 MYO1DO94832 1006 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 C1orf105O95561 183 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 MRPL19P49406 292 aaKnown RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 CDH12P55289 794 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 CREMQ03060 361 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 NFATC3Q12968 1075 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 SOWAHCQ53LP3 525 aaPredicted RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 TTC23Q5W5X9 447 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 BORAQ6PGQ7 559 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 CCDC71Q8IV32 467 aaPredicted RBP16.26■□□□□ 0.19
USP28-208ENST00000540438 TRAM1L1Q8N609 369 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 OR9Q2Q8NGE9 314 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 NODALQ96S42 347 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 KRT84Q9NSB2 600 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 TAS2R16Q9NYV7 291 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 C3orf18Q9UK00 162 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 RAB23Q9ULC3 237 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 INSL6Q9Y581 213 aa16.26■□□□□ 0.19
USP28-208ENST00000540438 M0QX08 132 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 LCKP06239 509 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 IDSP22304 550 aa16.25■□□□□ 0.19
USP28-208ENST00000540438 C21orf33P30042 268 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms