RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TGM6O95932 706 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 HTR2BP41595 481 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 MASP1P48740 699 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 DGKGP49619 791 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 ARSFP54793 590 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 GAD2Q05329 585 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 GRK1Q15835 563 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 RNF151Q2KHN1 245 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 ATAT1Q5SQI0 421 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 PRAMEF14Q5SWL7 426 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 PRAMEF13Q5VWM6 474 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 NXPE1Q8N323 547 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 OR14K1Q8NGZ2 314 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 FBXL20Q96IG2 436 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 CYP2S1Q96SQ9 504 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 ZNF700Q9H0M5 742 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 SRMSQ9H3Y6 488 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 H0YAE9 185 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 CYB5AP00167 134 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 IFNA17P01571 189 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 EBLN1P0CF75 366 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 IL12BP29460 328 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 CSKP41240 450 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 MC1RQ01726 317 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 MEP1AQ16819 746 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 GFOD2Q3B7J2 385 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 ADGRF1Q5T601 910 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 ARL9Q6T311 187 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 GOLGA7Q7Z5G4 137 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 FBXO22Q8NEZ5 403 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 PKP4Q99569 1192 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 OR2AG1Q9H205 316 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 BCAS3Q9H6U6 928 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 LYARQ9NX58 379 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 SLC2A6Q9UGQ3 507 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 CA5BQ9Y2D0 317 aa9.96□□□□□ -0.81
LIMCH1-203ENST00000396595 WNT9AO14904 365 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 G6PDP11413 515 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 MAP3K8P41279 467 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 WASP42768 502 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 TMBIM6P55061 237 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 PPP1R8Q12972 351 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 NOGQ13253 232 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 RABL3Q5HYI8 236 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 CLEC12AQ5QGZ9 265 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 PIM3Q86V86 326 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 COMMD7Q86VX2 200 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 WDSUB1Q8N9V3 476 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 OR2L2Q8NH16 312 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 THAP6Q8TBB0 222 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 NKD1Q969G9 470 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM203Q969S6 136 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 CMTM7Q96FZ5 175 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC45A3Q96JT2 553 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 HSH2DQ96JZ2 352 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 GAL3ST4Q96RP7 486 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 MMP27Q9H306 513 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 TPT1P8Q9HAU6 139 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 NUDT15Q9NV35 164 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 DUS2Q9NX74 493 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 SLIT2O94813 1529 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 LOC100509620A0A075B734 347 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 RAB36O95755 333 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 TGFB1P01137 390 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 C7P10643 843 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 FGF3P11487 239 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 PORP16435 677 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 HK1P19367 917 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 ERVK-21P61565 698 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 KRBOX4Q5JUW0 171 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 RRNAD1Q96FB5 475 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM74Q96NL1 305 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 HTATIP2Q9BUP3 242 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 PCDHB16Q9NRJ7 776 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 COPS7AQ9UBW8 275 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 CIB4A0PJX0 185 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 B8ZZF3 427 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 BHMG1C9JSJ3 638 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 SAP18O00422 153 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 CDRT1O95170 752 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 PTPN2P17706 415 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 PRMT2P55345 433 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 LYSMD3Q7Z3D4 306 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 MCEMP1Q8IX19 187 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 ATP6V1C2Q8NEY4 427 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 NR4A3Q92570 626 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC22A18Q96BI1 424 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 NDC1Q9BTX1 674 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 TLE6Q9H808 572 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 LIN28AQ9H9Z2 209 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 POPDC3Q9HBV1 291 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 NEUROD4Q9HD90 331 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 ABCB8Q9NUT2 735 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 GFOD1Q9NXC2 390 aa9.96□□□□□ -0.82
LIMCH1-203ENST00000396595 MYO5BQ9ULV0 1848 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ELOA3DA6NLF2 546 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 LOC730098B7Z3J9 87 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC33A1O00400 549 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 XPNPEP2O43895 674 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 USP2O75604 605 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms