RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ANGPTL2Q9UKU9 493 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PCDHB14Q9Y5E9 798 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 C15orf38-AP3S2A0A0A6YYH1 394 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 TCRBV3S1A0A5B6 114 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 SCAMP2O15127 329 aaKnown RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 WNT1P04628 370 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 LAMP1P11279 417 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PIM1P11309 404 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PTX3P26022 381 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 NUDT1P36639 197 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 KIR3DL1P43629 444 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 ILF3Q12906 894 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 FXNQ16595 210 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 SPATS1Q496A3 300 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PRPF38BQ5VTL8 546 aaKnown RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 IYDQ6PHW0 289 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 ARPINQ7Z6K5 226 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 SLC9B2Q86UD5 537 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 GPR180Q86V85 440 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 AMIGO1Q86WK6 493 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 DHFR2Q86XF0 187 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PTRH1Q86Y79 214 aaKnown RBP13.21□□□□□ -0.29
PTPRF-202ENST00000372405 ADGRF3Q8IZF5 1079 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 SPEM1Q8N4L4 309 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 OR8J3Q8NGG0 315 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 LCN9Q8WX39 176 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 SLCO4A1Q96BD0 722 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 MIEF2Q96C03 454 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 MS4A8Q9BY19 250 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 AICDAQ9GZX7 198 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 TWSG1Q9GZX9 223 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 KCNH6Q9H252 994 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 PIF1Q9H611 641 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 NMRK1Q9NWW6 199 aa13.21□□□□□ -0.29
PTPRF-202ENST00000372405 GNG14A0A1W2PPG7 69 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 GABRR3A8MPY1 467 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 METTL12A8MUP2 240 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 BTN3A3O00478 584 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 PLPP1O14494 284 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ARPC2O15144 300 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 OR1F1O43749 312 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 C1QCP02747 245 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 GSNP06396 782 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 CHRM5P08912 532 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-202ENST00000372405 COX7A2P14406 83 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 CXCR2P25025 360 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 NDUFS1P28331 727 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 SOX11P35716 441 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 OR4D2P58180 307 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 RHDQ02161 417 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ZNF763Q0D2J5 394 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 RUNDC3AQ59EK9 446 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 KIAA1614Q5VZ46 1190 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 C10orf111Q8N326 155 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 OR8J2Q8NGG1 315 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 FLVCR1-AS1Q8TAF5 88 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 CXorf40BQ96DE9 158 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 KLHDC7BQ96G42 594 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 AURKBQ96GD4 344 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-202ENST00000372405 F2RL3Q96RI0 385 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 MRPS30Q9NP92 439 aaKnown RBP13.2□□□□□ -0.3
PTPRF-202ENST00000372405 AASDHPPTQ9NRN7 309 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 OR6C2Q9NZP2 312 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 TAAR2Q9P1P5 351 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 BCAP29Q9UHQ4 241 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 KLHL20Q9Y2M5 609 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 C15orf41Q9Y2V0 281 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 A0A096LPI6 279 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 PRSS51A0A1B0GVH4 220 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ANKDD1BA6NHY2 528 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 AXIN1O15169 862 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 KLK1P06870 262 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 MAOBP27338 520 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 TPP2P29144 1249 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-202ENST00000372405 SHMT2P34897 504 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 BCL6P41182 706 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ASMTP46597 345 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 PHEXP78562 749 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 SRSF11Q05519 484 aaKnown RBP13.2□□□□□ -0.3
PTPRF-202ENST00000372405 BNIP2Q12982 314 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 DPY19L1Q2PZI1 675 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 WLSQ5T9L3 541 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 DEPDC1Q5TB30 811 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 KHDRBS2Q5VWX1 349 aaKnown RBP13.2□□□□□ -0.3
PTPRF-202ENST00000372405 LCN8Q6JVE9 175 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 MSANTD1Q6ZTZ1 278 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ADCK2Q7Z695 626 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 KBTBD2Q8IY47 623 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 LILRA2Q8N149 483 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 FAM110BQ8TC76 370 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 CREB3L4Q8TEY5 395 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ZUFSPQ96AP4 578 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ITCHQ96J02 903 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ZNF583Q96ND8 569 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 KCTD14Q9BQ13 255 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-202ENST00000372405 DPH7Q9BTV6 452 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 PITHD1Q9GZP4 211 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-202ENST00000372405 LHX9Q9NQ69 397 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ACTR3BQ9P1U1 418 aa13.2□□□□□ -0.3
PTPRF-202ENST00000372405 ADGRE2Q9UHX3 823 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms