RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CAMKMTQ7Z624 323 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 CENPSQ8N2Z9 138 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 RASGEF1AQ8N9B8 481 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 YIPF6Q96EC8 236 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 SH3YL1Q96HL8 342 aaPredicted RBP21.98■■□□□ 1.11
VPS53-211ENST00000571805 HEPHQ9BQS7 1158 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 RHNO1Q9BSD3 238 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 SPATA9Q9BWV2 254 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 ASPSCR1Q9BZE9 553 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 THUMPD1Q9NXG2 353 aaKnown RBP21.98■■□□□ 1.11
VPS53-211ENST00000571805 OGDHLQ9ULD0 1010 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 ERGIC3Q9Y282 383 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 SOBPA7XYQ1 873 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 TMEM229AB2RXF0 380 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 DPM1O60762 260 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 KCNJ10P78508 379 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 CREMQ03060 361 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 LDLRAP1Q5SW96 308 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 KIAA1614Q5VZ46 1190 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 IGFN1Q86VF2 1251 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 OR56A3Q8NH54 315 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 CHTF18Q8WVB6 975 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 BTN2A2Q8WVV5 523 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 ZNF347Q96SE7 839 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 ZSCAN5AQ9BUG6 496 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 REEP1Q9H902 201 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 ASAH2Q9NR71 780 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 KRT84Q9NSB2 600 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 HCFC1R1Q9NWW0 138 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 SCN3BQ9NY72 215 aa21.98■■□□□ 1.11
VPS53-211ENST00000571805 NFKBIL1Q9UBC1 381 aaPredicted RBP21.98■■□□□ 1.11
VPS53-211ENST00000571805 SLC16A8O95907 504 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 ANXA4P09525 319 aaPredicted RBP21.97■■□□□ 1.11
VPS53-211ENST00000571805 IDSP22304 550 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 IMPA1P29218 277 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 RECQLP46063 649 aaPredicted RBP21.97■■□□□ 1.11
VPS53-211ENST00000571805 ASMTP46597 345 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 BDKRB1P46663 353 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 PSMD7P51665 324 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 ARSIQ5FYB1 569 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 SYT6Q5T7P8 510 aaPredicted RBP21.97■■□□□ 1.11
VPS53-211ENST00000571805 OR7G3Q8NG95 312 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 ZFP90Q8TF47 636 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 IRF7Q92985 503 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 COQ8BQ96D53 544 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 PKP4Q99569 1192 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 SLC5A10A0PJK1 596 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 SH3BGRLO75368 114 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 RGNQ15493 299 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 ADPRMQ3LIE5 342 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 SYTL3Q4VX76 610 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 CCDC149Q6ZUS6 474 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 ATG16L2Q8NAA4 619 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 ZNF296Q8WUU4 475 aaPredicted RBP21.97■■□□□ 1.11
VPS53-211ENST00000571805 GLMNQ92990 594 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 UBE2FQ969M7 185 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 TMEM159Q96B96 161 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 TPD52L3Q96J77 140 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 TOX2Q96NM4 488 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 PITX2Q99697 317 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 TBX21Q9UL17 535 aa21.97■■□□□ 1.11
VPS53-211ENST00000571805 ABHD14A-ACY1A0A1B0GW23 586 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 TSPAN11A1L157 253 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 CCL16O15467 120 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 GCM2O75603 506 aaPredicted RBP21.96■■□□□ 1.11
VPS53-211ENST00000571805 MT-ND2P03891 347 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 TYRP14679 529 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 IDUAP35475 653 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 GAB1Q13480 694 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 HKDC1Q2TB90 917 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 TECPR1Q7Z6L1 1165 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 KREMEN2Q8NCW0 462 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 HUS1BQ8NHY5 278 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 LINC00597Q9H2U6 94 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 KIF17Q9P2E2 1029 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 EXO1Q9UQ84 846 aaKnown RBP21.96■■□□□ 1.11
VPS53-211ENST00000571805 TTC34A8MYJ7 566 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 QSOX1O00391 747 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 FGF18O76093 207 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 C9P02748 559 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 CATP04040 527 aaKnown RBP21.96■■□□□ 1.11
VPS53-211ENST00000571805 CTSLP07711 333 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 ABCB1P08183 1280 aaPredicted RBP21.96■■□□□ 1.11
VPS53-211ENST00000571805 OCM2P0CE71 109 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 OCMP0CE72 109 aaPredicted RBP21.96■■□□□ 1.11
VPS53-211ENST00000571805 PRMT2P55345 433 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 NPRL3Q12980 569 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 E2F2Q14209 437 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 TSEN54Q7Z6J9 526 aaKnown RBP21.96■■□□□ 1.11
VPS53-211ENST00000571805 NPAS3Q8IXF0 933 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 ZNF540Q8NDQ6 660 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 MAL2Q969L2 176 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 TCEAL4Q96EI5 215 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 MRGPRX3Q96LB0 322 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 EPYCQ99645 322 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 COQ6Q9Y2Z9 468 aa21.96■■□□□ 1.11
VPS53-211ENST00000571805 SLC22A1O15245 554 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 WBP4O75554 376 aaKnown RBP21.95■■□□□ 1.1
VPS53-211ENST00000571805 FUCA1P04066 466 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 RPP38P78345 283 aaKnown RBP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms