RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ZSCAN12O43309 604 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 TSPAN12O95859 305 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 TNFSF10P50591 281 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 CDKN2DP55273 166 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 MAT1AQ00266 395 aaKnown RBP16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 EEF1A2Q05639 463 aaKnown RBP16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 DHX9Q08211 1270 aaKnown RBP16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 SYT16Q17RD7 645 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 ZNF324BQ6AW86 544 aaPredicted RBP16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 HIST2H2BCQ6DN03 193 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 MYO1HQ8N1T3 1032 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 OR9A4Q8NGU2 314 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 CNDP1Q96KN2 507 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 PLAC1Q9HBJ0 212 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 ABCF3Q9NUQ8 709 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 MKL2Q9ULH7 1088 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 CORO1CQ9ULV4 474 aaPredicted RBP16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 NBPF19A0A087WUL8 3843 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 TRAV17A0A0B4J275 112 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 DYTNA2CJ06 578 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 CLDN1O95832 211 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 C8orf89P0DMQ9 161 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 NPPBP16860 134 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 BCL6P41182 706 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 ARG2P78540 354 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 PHKG1Q16816 387 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 ZXDCQ2QGD7 858 aaPredicted RBP16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 RBM20Q5T481 1227 aaKnown RBP16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 TEDDM1Q5T9Z0 273 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 C17orf64Q86WR6 236 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 IGDCC3Q8IVU1 814 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 PALM2Q8IXS6 379 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 CAMKVQ8NCB2 501 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 ABHD11Q8NFV4 315 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 OR4K1Q8NGD4 311 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 OR1N1Q8NGS0 311 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 CERS2Q96G23 380 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 CYTH2Q99418 400 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 VN1R1Q9GZP7 353 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 DDX47Q9H0S4 455 aaKnown RBP16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 PTGFRNQ9P2B2 879 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 ASIC3Q9UHC3 531 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 SH2B3Q9UQQ2 575 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 SLC22A7Q9Y694 548 aa16.29■□□□□ 0.2
VPS9D1-203ENST00000563798 LCMT2O60294 686 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 WFS1O76024 890 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 HIST1H2AGP0C0S8 130 aaPredicted RBP16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 TCP1P17987 556 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 HIST1H2ADP20671 130 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 AP1S2P56377 157 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 NAE1Q13564 534 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 FRG1Q14331 258 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 DUPD1Q68J44 220 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 FAAH2Q6GMR7 532 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 FAM180AQ6UWF9 173 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 SYDE1Q6ZW31 735 aaPredicted RBP16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 ASPGQ86U10 573 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 BCORP1Q8N888 145 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 OR56A3Q8NH54 315 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 OR51Q1Q8NH59 317 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 METTL21AQ8WXB1 218 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 LRRC39Q96DD0 335 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 LINGO1Q96FE5 620 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 PDLIM5Q96HC4 596 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 HIST1H2AHQ96KK5 128 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 HIST1H2AJQ99878 128 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 HAUS8Q9BT25 410 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 H2AFJQ9BTM1 129 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 ATG10Q9H0Y0 220 aa16.28■□□□□ 0.2
VPS9D1-203ENST00000563798 A1L4Q6 167 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 BANF1O75531 89 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 JRKO75564 520 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 CELA2AP08217 269 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 STSP08842 583 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 ITGAMP11215 1152 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 IL10P22301 178 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 GRK3P35626 688 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 IL2P60568 153 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 CBLBQ13191 982 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 MORF4L2Q15014 288 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 STEAP4Q687X5 459 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 PLAG1Q6DJT9 500 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 CAPN13Q6MZZ7 669 aaPredicted RBP16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 H3F3CQ6NXT2 135 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 MBOAT1Q6ZNC8 495 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 PRSS41Q7RTY9 318 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 CPEB2Q7Z5Q1 589 aaKnown RBP16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 STRA8Q7Z7C7 330 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 PDIK1LQ8N165 341 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 AFAP1L2Q8N4X5 818 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 SIRT6Q8N6T7 355 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 MFSD9Q8NBP5 474 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 SLC13A3Q8WWT9 602 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 TAAR6Q96RI8 345 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 OLAHQ9NV23 265 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 PLA2G3Q9NZ20 509 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 C19orf25Q9UFG5 118 aaPredicted RBP16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 VWA7Q9Y334 891 aa16.27■□□□□ 0.2
VPS9D1-203ENST00000563798 ENO2P09104 434 aaPredicted RBP16.26■□□□□ 0.19
VPS9D1-203ENST00000563798 IL1RNP18510 177 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms