RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 DUTP33316 252 aaKnown RBP3.82□□□□□ -1.8
SCFD1-221ENST00000556534 TAF6P49848 677 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 MFAP3P55082 362 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 SGCGQ13326 291 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 FASTKD3Q14CZ7 662 aaKnown RBP3.82□□□□□ -1.8
SCFD1-221ENST00000556534 RBBP7Q16576 425 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 SNAI3Q3KNW1 292 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 MOGAT2Q3SYC2 334 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 GLIPR1L2Q4G1C9 344 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 C11orf57Q6ZUT1 292 aaPredicted RBP3.82□□□□□ -1.8
SCFD1-221ENST00000556534 ADCK2Q7Z695 626 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 APCDD1Q8J025 514 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 AQP11Q8NBQ7 271 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 OCC1Q8TAD7 63 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 C9orf43Q8TAL5 461 aaPredicted RBP3.82□□□□□ -1.8
SCFD1-221ENST00000556534 GTF3AQ92664 365 aaKnown RBP3.82□□□□□ -1.8
SCFD1-221ENST00000556534 RAD54LQ92698 747 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 PRICKLE1Q96MT3 831 aaPredicted RBP3.82□□□□□ -1.8
SCFD1-221ENST00000556534 GDAP1L1Q96MZ0 367 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 DNAI2Q9GZS0 605 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 HOXD1Q9GZZ0 328 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 TEX10Q9NXF1 929 aaPredicted RBP3.82□□□□□ -1.8
SCFD1-221ENST00000556534 NDE1Q9NXR1 346 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 THEGQ9P2T0 379 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 SNX7Q9UNH6 387 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 WIPI2Q9Y4P8 454 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 SELENOKQ9Y6D0 94 aa3.82□□□□□ -1.8
SCFD1-221ENST00000556534 IL16Q14005 1332 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 IGHV3OR16-10A0A075B7F0 116 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 A0A1W2PPW3 197 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 IDH3BO43837 385 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 LUC7L3O95232 432 aaKnown RBP3.81□□□□□ -1.8
SCFD1-221ENST00000556534 QDPRP09417 244 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 CETN2P41208 172 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 ENPP2Q13822 863 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 LY6DQ14210 128 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 TAF1BQ53T94 588 aaPredicted RBP3.81□□□□□ -1.8
SCFD1-221ENST00000556534 FAM133BQ5BKY9 247 aaKnown RBP3.81□□□□□ -1.8
SCFD1-221ENST00000556534 LRRC73Q5JTD7 316 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 C1QTNF12Q5T7M4 302 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 FAM166AQ6J272 317 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 NOTUMQ6P988 496 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 CYB5D1Q6P9G0 228 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 TRAT1Q6PIZ9 186 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 MOXD1Q6UVY6 613 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 AMIGO1Q86WK6 493 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 Q8NBF4 154 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 OR5T2Q8NGG2 359 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 SIPA1Q96FS4 1042 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 PGM2Q96G03 612 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 RBM41Q96IZ5 413 aaKnown RBP3.81□□□□□ -1.8
SCFD1-221ENST00000556534 RIMS4Q9H426 269 aaPredicted RBP3.81□□□□□ -1.8
SCFD1-221ENST00000556534 LMAN1LQ9HAT1 526 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 TBC1D13Q9NVG8 400 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 NUDT4Q9NZJ9 180 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 PKD2L2Q9NZM6 624 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 IL36AQ9UHA7 158 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 PILRBQ9UKJ0 227 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 MMP24Q9Y5R2 645 aa3.81□□□□□ -1.8
SCFD1-221ENST00000556534 PCNX3Q9H6A9 2034 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 ARID2Q68CP9 1835 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 NOTCH3Q9UM47 2321 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 FAM86B1E9PN63 330 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 E9PQ18 207 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 G3V2L1 256 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 FAM86B2P0C5J1 330 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 SPP1P10451 314 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 SFTPDP35247 375 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 CRKLP46109 303 aaKnown RBP3.8□□□□□ -1.8
SCFD1-221ENST00000556534 NAGLUP54802 743 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 TMEM50BP56557 158 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 LMO4P61968 165 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 TNK1Q13470 666 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 ALDH1L2Q3SY69 923 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 SPECC1Q5M775 1068 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 BTNL8Q6UX41 500 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 ZER1Q7Z7L7 766 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 ANKRD23Q86SG2 305 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 GBP7Q8N8V2 638 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-221ENST00000556534 NUP37Q8NFH4 326 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 OR4C15Q8NGM1 316 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 OMA1Q96E52 524 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 CNRIP1Q96F85 164 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-221ENST00000556534 RAB3IPQ96QF0 476 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-221ENST00000556534 LRRC61Q9BV99 259 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 SNX25Q9H3E2 840 aa3.8□□□□□ -1.8
SCFD1-221ENST00000556534 IGKV3D-20A0A0C4DH25 116 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 A0A1W2PRQ8 180 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 TSPY2A6NKD2 308 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 NPIPB9F8W1W9 429 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 SURF4O15260 269 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 CYTIPO60759 359 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 GBAP04062 536 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 GLULP15104 373 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 MYOGP15173 224 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 AADACP22760 399 aa3.79□□□□□ -1.8
SCFD1-221ENST00000556534 SP100P23497 879 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-221ENST00000556534 RBMS1P29558 406 aaKnown RBP3.79□□□□□ -1.8
SCFD1-221ENST00000556534 TIA1P31483 386 aaKnown RBP eCLIP3.79□□□□□ -1.8
SCFD1-221ENST00000556534 CDX1P47902 265 aaPredicted RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms