RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 GLRX5Q86SX6 157 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 KIRREL3Q8IZU9 778 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 RNF175Q8N4F7 328 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 MTFMTQ96DP5 389 aaKnown RBP18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 FCRL4Q96PJ5 515 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 FRG2BQ96QU4 278 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 GFM1Q96RP9 751 aaKnown RBP18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 HBEGFQ99075 208 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SARGQ9BW04 601 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 FAM107BQ9H098 131 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 EPN3Q9H201 632 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 NT5DC2Q9H857 520 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 FAM60AQ9NP50 221 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SEMA5BQ9P283 1151 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PILRAQ9UKJ1 303 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SNX6Q9UNH7 406 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 USH1CQ9Y6N9 552 aa18.13■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SRRM3A6NNA2 597 aaPredicted RBP18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 HDAC3O15379 428 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 OR1F1O43749 312 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 ULK1O75385 1050 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PCNAP12004 261 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 GRK3P35626 688 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 BCL6P41182 706 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SCTRP47872 440 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CLDN6P56747 220 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 BTKQ06187 659 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SF3A3Q12874 501 aaKnown RBP eCLIP18.12■□□□□ 0.493e-6■■■□□ 16.5
TNFRSF1A-213ENST00000540022 ABRAXAS2Q15018 415 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CLPPQ16740 277 aaPredicted RBP18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SGO1Q5FBB7 561 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PRSS42Q7Z5A4 293 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CARFQ8N187 725 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CHCHD4Q8N4Q1 142 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 AFAP1L2Q8N4X5 818 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 OR4D9Q8NGE8 314 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SELENOMQ8WWX9 145 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 USP7Q93009 1102 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 UBE2E3Q969T4 207 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 FAR2Q96K12 515 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 DPYSL5Q9BPU6 564 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 NUF2Q9BZD4 464 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PITHD1Q9GZP4 211 aaPredicted RBP18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 ELOVL6Q9H5J4 265 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 NPHS2Q9NP85 383 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PDP2Q9P2J9 529 aa18.12■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CACNA1BQ00975 2339 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 A0A0J9YVX5 310 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 IGHV5-10-1A0A0J9YXX1 117 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 A8MU76 341 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 D6RAR5 112 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SLCO1B7G3V0H7 640 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PIP5K1BO14986 540 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CHEK2O96017 543 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PDYNP01213 254 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 EZRP15311 586 aaKnown RBP18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SPINK2P20155 84 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CBX1P83916 185 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 RELAQ04206 551 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CYP4F3Q08477 520 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 IFT88Q13099 833 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SPIDRQ14159 915 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 VWA5B1Q5TIE3 1220 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 VN1R5Q7Z5H4 357 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 RFWD2Q8NHY2 731 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 REPS1Q96D71 796 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 MTERF1Q99551 399 aaKnown RBP18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 TRIM55Q9BYV6 548 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 VTI1BQ9UEU0 232 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 TSC22D4Q9Y3Q8 395 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PCDHGA4Q9Y5G9 962 aa18.11■□□□□ 0.49
TNFRSF1A-213ENST00000540022 HCRTR1O43613 425 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 RFPL3O75679 317 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 ZBTB11O95625 1053 aaPredicted RBP18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 LINC00032P0C843 101 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 THRAP10827 490 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 ALOX15P16050 662 aaPredicted RBP18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SEPHS1P49903 392 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 HK2P52789 917 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 RPS15AP62244 130 aaKnown RBP18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 ILKQ13418 452 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 DDX39BQ13838 428 aaKnown RBP18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 RNF44Q7L0R7 432 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 CPLX4Q7Z7G2 160 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 SLITRK4Q8IW52 837 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 DDIASQ8IXT1 998 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 MFSD9Q8NBP5 474 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 HUS1BQ8NHY5 278 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 ZNF473Q8WTR7 871 aaKnown RBP18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 TCTN2Q96GX1 697 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 PPP1R36Q96LQ0 422 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 C3orf30Q96M34 536 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 OR2A5Q96R48 311 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 ZFYVE21Q9BQ24 234 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 NSRP1Q9H0G5 558 aaKnown RBP18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 RHBGQ9H310 441 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 KCNK13Q9HB14 408 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 DCTN4Q9UJW0 460 aa18.1■□□□□ 0.49
TNFRSF1A-213ENST00000540022 ASXL3Q9C0F0 2248 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms