RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 USP10Q14694 798 aaKnown RBP14.05□□□□□ -0.16
USP28-204ENST00000537642 RBBP7Q16576 425 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 NDUFA9Q16795 377 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 SYT16Q17RD7 645 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 CATSPEREQ5SY80 951 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 ADAMTSL2Q86TH1 951 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 LAPTM4BQ86VI4 370 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 CTAGE3PQ8IX95 158 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 GALNT16Q8N428 558 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 PPM1NQ8N819 430 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 MFSD9Q8NBP5 474 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 OR4K1Q8NGD4 311 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 FBF1Q8TES7 1133 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 TSPAN17Q96FV3 270 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 YIPF2Q9BWQ6 316 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 UNKQ9C0B0 810 aaKnown RBP14.05□□□□□ -0.16
USP28-204ENST00000537642 DERL2Q9GZP9 239 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 TRPC4Q9UBN4 977 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 CTNNAL1Q9UBT7 734 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 G3BP2Q9UN86 482 aaKnown RBP14.05□□□□□ -0.16
USP28-204ENST00000537642 TENM4Q6N022 2769 aa14.05□□□□□ -0.16
USP28-204ENST00000537642 FAM155BO75949 473 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 ANXA5P08758 320 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 STX2P32856 288 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 GRK3P35626 688 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 CSRP3P50461 194 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 SOX8P57073 446 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 MAT1AQ00266 395 aaKnown RBP14.04□□□□□ -0.16
USP28-204ENST00000537642 MYBPC3Q14896 1274 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 NADK2Q4G0N4 442 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 GRTP1Q5TC63 336 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 VWA5B1Q5TIE3 1220 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 TMEM214Q6NUQ4 689 aaKnown RBP14.04□□□□□ -0.16
USP28-204ENST00000537642 PRSS41Q7RTY9 318 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 ASPGQ86U10 573 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 THOC6Q86W42 341 aaKnown RBP14.04□□□□□ -0.16
USP28-204ENST00000537642 SPATA6LQ8N4H0 392 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 MMGT1Q8N4V1 131 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 KCT2Q8NC54 265 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 NOA1Q8NC60 698 aaKnown RBP14.04□□□□□ -0.16
USP28-204ENST00000537642 CAMKVQ8NCB2 501 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 OR11G2Q8NGC1 345 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 OR9A4Q8NGU2 314 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 SLC5A11Q8WWX8 675 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 NEIL2Q969S2 332 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 TSNARE1Q96NA8 513 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 SARGQ9BW04 601 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 TGIF2Q9GZN2 237 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 ZNF552Q9H707 407 aaPredicted RBP14.04□□□□□ -0.16
USP28-204ENST00000537642 ATP13A2Q9NQ11 1180 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 C3orf18Q9UK00 162 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 SLC22A14Q9Y267 594 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 MAP4K5Q9Y4K4 846 aa14.04□□□□□ -0.16
USP28-204ENST00000537642 TRBC2A0A5B9 178 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 OR1F1O43749 312 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 NSA2O95478 260 aaKnown RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 CCDC166P0CW27 439 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 CD1DP15813 335 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 STMN1P16949 149 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 SPRP35270 261 aaPredicted RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 AVPR1BP47901 424 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 HNMTP50135 292 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 KCNC4Q03721 635 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 AIMP2Q13155 320 aaKnown RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 CSHL1Q14406 222 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 EFTUD2Q15029 972 aaKnown RBP eCLIP14.03□□□□□ -0.162e-6■■■■■ 27.7
USP28-204ENST00000537642 ZKSCAN8Q15776 578 aaPredicted RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 IGFBP7Q16270 282 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 C18orf21Q32NC0 220 aaPredicted RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 TUBB8Q3ZCM7 444 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 FRA10AC1Q70Z53 315 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 ZC3H7AQ8IWR0 971 aaKnown RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 SHISA5Q8N114 240 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 RBMXL3Q8N7X1 1067 aaKnown RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 ZNF740Q8NDX6 193 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 SLC13A3Q8WWT9 602 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 RHBDF1Q96CC6 855 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 EGFL8Q99944 293 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 FAM129AQ9BZQ8 928 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 SPNS1Q9H2V7 528 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 MKKSQ9NPJ1 570 aaPredicted RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 C14orf105Q9NVL8 296 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 C5AR2Q9P296 337 aa14.03□□□□□ -0.16
USP28-204ENST00000537642 DMGDHQ9UI17 866 aaKnown RBP14.03□□□□□ -0.16
USP28-204ENST00000537642 CNTRLQ7Z7A1 2325 aa14.02□□□□□ -0.16
USP28-204ENST00000537642 IDSB3KWA1 339 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 H0YIG0 161 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 DPM1O60762 260 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 IL1RNP18510 177 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 GMPRP36959 345 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 SLC6A12P48065 614 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 EFNA3P52797 238 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 EMP2P54851 167 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 MLLT10P55197 1068 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 RAB10P61026 200 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 FOXK1P85037 733 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 REEP5Q00765 189 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 NAB1Q13506 487 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 TGFBIQ15582 683 aa14.02□□□□□ -0.17
USP28-204ENST00000537642 OR4D1Q15615 310 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms