RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 PDK4Q16654 411 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 TYSND1Q2T9J0 566 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 HNRNPA1L2Q32P51 320 aaKnown RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 TAF1BQ53T94 588 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 ZNF805Q5CZA5 627 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 PRAMEF14Q5SWL7 426 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 C9orf64Q5T6V5 341 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 HECTD2Q5U5R9 776 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 CES4AQ5XG92 561 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 LRRC66Q68CR7 880 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 MRNIPQ6NTE8 343 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ZNF549Q6P9A3 640 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 BRAT1Q6PJG6 821 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ZCCHC23Q6ZST2 131 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 TPRG1Q6ZUI0 275 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ZNF771Q7L3S4 317 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 PARS2Q7L3T8 475 aaKnown RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 TAS2R42Q7RTR8 314 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ATG4DQ86TL0 474 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 STK32CQ86UX6 486 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 SERPINA9Q86WD7 417 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 HEATR4Q86WZ0 1026 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 EPHX4Q8IUS5 362 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 TBC1D21Q8IYX1 336 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 CENPLQ8N0S6 344 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 SPATA6LQ8N4H0 392 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 GPR26Q8NDV2 337 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 IL17RDQ8NFM7 739 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 GPR150Q8NGU9 434 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ABHD4Q8TB40 342 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 BCAS4Q8TDM0 211 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 LRRC8CQ8TDW0 803 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ACMSDQ8TDX5 336 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ZNF473Q8WTR7 871 aaKnown RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 UCMAQ8WVF2 138 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 KCTD4Q8WVF5 259 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 OR8D1Q8WZ84 308 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 CFHR4Q92496 578 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ATOH1Q92858 354 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 PEX13Q92968 403 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ARRDC3Q96B67 414 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 FAM136AQ96C01 138 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 NXNL1Q96CM4 212 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 THOC1Q96FV9 657 aaKnown RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 CHMP6Q96FZ7 201 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 MAGEB18Q96M61 343 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ZNF641Q96N77 438 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 NECTIN4Q96NY8 510 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ZNF317Q96PQ6 595 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 MCCC1Q96RQ3 725 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 OMDQ99983 421 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 WRAP53Q9BUR4 548 aaKnown RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 C11orf54Q9H0W9 315 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 ABCG8Q9H221 673 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 CCDC134Q9H6E4 229 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 UBE2ZQ9H832 354 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 SLCO1B3Q9NPD5 702 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 SLAMF7Q9NQ25 335 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 HEBP1Q9NRV9 189 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 SPATA6Q9NWH7 488 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 HPF1Q9NWY4 346 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ING3Q9NXR8 418 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 TMEM216Q9P0N5 145 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 KIF17Q9P2E2 1029 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 THAP10Q9P2Z0 257 aaPredicted RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 GIMAP2Q9UG22 337 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 CD84Q9UIB8 345 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 SLC13A4Q9UKG4 626 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 TLK1Q9UKI8 766 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 RPL26L1Q9UNX3 145 aaKnown RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 PLA2G4CQ9UP65 541 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 SLC8A2Q9UPR5 921 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 RUVBL2Q9Y230 463 aaKnown RBP4.07□□□□□ -1.76
CD44-226ENST00000527889 VWA7Q9Y334 891 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 PRSS21Q9Y6M0 314 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 SLC30A1Q9Y6M5 507 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 FRYQ5TBA9 3013 aa4.07□□□□□ -1.76
CD44-226ENST00000527889 ZZEF1O43149 2961 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 GLYATL1P3A0A0U1RQE8 302 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 TSPAN11A1L157 253 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 OR14I1A6ND48 311 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 IQCF5A8MTL0 148 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.06□□□□□ -1.76
CD44-226ENST00000527889 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.06□□□□□ -1.76
CD44-226ENST00000527889 PROB1E7EW31 1015 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 SPECC1L-ADORA2AF8WAN1 911 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 H7C0S8 307 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 K7EQS6 105 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 NDUFAB1O14561 156 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 ASNA1O43681 348 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 NARSO43776 548 aaKnown RBP4.06□□□□□ -1.76
CD44-226ENST00000527889 LYPLA1O75608 230 aaPredicted RBP4.06□□□□□ -1.76
CD44-226ENST00000527889 SRP72O76094 671 aaKnown RBP4.06□□□□□ -1.76
CD44-226ENST00000527889 UNC5CO95185 931 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 EGFP01133 1207 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 IL1BP01584 269 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 BPGMP07738 259 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 CCDC166P0CW27 439 aa4.06□□□□□ -1.76
CD44-226ENST00000527889 FGF3P11487 239 aaPredicted RBP4.06□□□□□ -1.76
CD44-226ENST00000527889 PKMP14618 531 aaKnown RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms