RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 C8orf89P0DMQ9 161 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 EZRP15311 586 aaKnown RBP13.46□□□□□ -0.25
CPSF1-201ENST00000526271 IL1RNP18510 177 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 CXCR2P25025 360 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 IMPA1P29218 277 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 COILP38432 576 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-201ENST00000526271 ADARP55265 1226 aaKnown RBP13.46□□□□□ -0.25
CPSF1-201ENST00000526271 RELAQ04206 551 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 CUL1Q13616 776 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 FAM53BQ14153 422 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 NAA30Q147X3 362 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-201ENST00000526271 ARHGAP19Q14CB8 494 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 ANKRD20A4Q4UJ75 823 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 ACER2Q5QJU3 275 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 ABHD17BQ5VST6 288 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 PLAG1Q6DJT9 500 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 TTC23LQ6PF05 361 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 RPTNQ6XPR3 784 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 CPEB2Q7Z5Q1 589 aaKnown RBP13.46□□□□□ -0.25
CPSF1-201ENST00000526271 TRIM58Q8NG06 486 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 TM4SF19Q96DZ7 209 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 PRAP1Q96NZ9 151 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 TREX2Q9BQ50 279 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-201ENST00000526271 TRIM51Q9BSJ1 452 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 KLHL1Q9NR64 748 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 LANCL2Q9NS86 450 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 HCN3Q9P1Z3 774 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 PAK5Q9P286 719 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 ANAPC5Q9UJX4 755 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 CDC14AQ9UNH5 594 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 MEMO1Q9Y316 297 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 ACANP16112 2415 aa13.46□□□□□ -0.25
CPSF1-201ENST00000526271 HRNRQ86YZ3 2850 aaPredicted RBP13.46□□□□□ -0.26
CPSF1-201ENST00000526271 CTAGE15A4D2H0 777 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 A8MUI8 341 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 GFYI3L273 518 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 SMAPO00193 183 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 KPNA5O15131 536 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 LCMT2O60294 686 aaKnown RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 PHF2O75151 1096 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 PKMP14618 531 aaKnown RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 RPA3P35244 121 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 PPARGP37231 505 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 SKIV2L2P42285 1042 aaKnown RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 KCNJ1P48048 391 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 RHAGQ02094 409 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 TSTA3Q13630 321 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 MEI1Q5TIA1 1274 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 ANKRD22Q5VYY1 191 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 TMEM214Q6NUQ4 689 aaKnown RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 XKRXQ6PP77 449 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 CTAGE6Q86UF2 777 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 SPPL2CQ8IUH8 684 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 CILP2Q8IUL8 1156 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 KCT2Q8NC54 265 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 FBXO15Q8NCQ5 510 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 OR51Q1Q8NH59 317 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 THAP3Q8WTV1 239 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 ASB11Q8WXH4 323 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 TSLPQ969D9 159 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 DMRTA2Q96SC8 542 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 IL22Q9GZX6 179 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 SUCOQ9UBS9 1254 aaKnown RBP13.45□□□□□ -0.26
CPSF1-201ENST00000526271 ITGB1BP2Q9UKP3 347 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 SOX13Q9UN79 622 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 ASB1Q9Y576 335 aa13.45□□□□□ -0.26
CPSF1-201ENST00000526271 NAV3Q8IVL0 2385 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 EML6Q6ZMW3 1958 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 NPIPA5E9PKD4 350 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 SGK494L7N484 410 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 NSA2O95478 260 aaKnown RBP13.44□□□□□ -0.26
CPSF1-201ENST00000526271 GAS8O95995 478 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 B3GALT4O96024 378 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 ESR1P03372 595 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 COX6B1P14854 86 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 DEKP35659 375 aaKnown RBP13.44□□□□□ -0.26
CPSF1-201ENST00000526271 BCL6P41182 706 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 CSNK1G2P78368 415 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 OR1C1Q15619 314 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 BTBD16Q32M84 506 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 KIAA0930Q6ICG6 404 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-201ENST00000526271 C3P1Q6ZMU1 363 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 MBOAT1Q6ZNC8 495 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 CAND1Q86VP6 1230 aaKnown RBP13.44□□□□□ -0.26
CPSF1-201ENST00000526271 DENND6AQ8IWF6 608 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 C17orf53Q8N3J3 647 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-201ENST00000526271 KIF2BQ8N4N8 673 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 MARVELD2Q8N4S9 558 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 PRELID2Q8N945 189 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 OR5T3Q8NGG3 340 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 MTFMTQ96DP5 389 aaKnown RBP13.44□□□□□ -0.26
CPSF1-201ENST00000526271 FOPNLQ96NB1 174 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 RBCK1Q9BYM8 510 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 ENKD1Q9H0I2 346 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 CHST11Q9NPF2 352 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 ABCF3Q9NUQ8 709 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 ADAMTS6Q9UKP5 1117 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 NPIPA1Q9UND3 350 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 PCDHGB6Q9Y5F9 930 aa13.44□□□□□ -0.26
CPSF1-201ENST00000526271 NIPBLQ6KC79 2804 aaeCLIP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms