RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	GPR87	Q9BY21	358 aa		9.37	□□□□□ -0.91
CALD1-223	ENST00000496024	PARD6B	Q9BYG5	372 aa		9.37	□□□□□ -0.91
CALD1-223	ENST00000496024	NLN	Q9BYT8	704 aa		9.37	□□□□□ -0.91
CALD1-223	ENST00000496024	SPNS1	Q9H2V7	528 aa		9.37	□□□□□ -0.91
CALD1-223	ENST00000496024	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	9.37	□□□□□ -0.91
CALD1-223	ENST00000496024	PTBP2	Q9UKA9	531 aa	Known RBP	9.37	□□□□□ -0.91
CALD1-223	ENST00000496024	RUVBL1	Q9Y265	456 aa	Known RBP	9.37	□□□□□ -0.91
CALD1-223	ENST00000496024	ASB1	Q9Y576	335 aa		9.37	□□□□□ -0.91
CALD1-223	ENST00000496024	ATM	Q13315	3056 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MED13	Q9UHV7	2174 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024		A0A0A6YYC8	382 aa	Predicted RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	TRBC2	A0A5B9	178 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	TLDC2	A0PJX2	215 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	SYCE1L	A8MT33	242 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024		I3L1I5	382 aa	Predicted RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MAP2K7	O14733	419 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	FFAR3	O14843	346 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	GPR42	O15529	346 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	H2AFY	O75367	372 aa	Known RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	RFPL1	O75677	317 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	IPO13	O94829	963 aa	Known RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	FURIN	P09958	794 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	C1GALT1C1L	P0DN25	315 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MTHFD2	P13995	350 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	GNAZ	P19086	355 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	GGT5	P36269	586 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	GCGR	P47871	477 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	SNRPN	P63162	240 aa	Known RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	REEP5	Q00765	189 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MC1R	Q01726	317 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	NCF4	Q15080	339 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	PDK4	Q16654	411 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	PFKFB4	Q16877	469 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	TECRL	Q5HYJ1	363 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	CDKL4	Q5MAI5	379 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	YOD1	Q5VVQ6	348 aa	Predicted RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	WDR93	Q6P2C0	686 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	ZNF517	Q6ZMY9	492 aa	Predicted RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	SHISA6	Q6ZSJ9	500 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	ASPG	Q86U10	573 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	TMEM151B	Q8IW70	566 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	KLHDC8A	Q8IYD2	350 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	PRSS58	Q8IYP2	241 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	TBC1D19	Q8N5T2	526 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MFSD9	Q8NBP5	474 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	KCT2	Q8NC54	265 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	CAMKV	Q8NCB2	501 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	PDPR	Q8NCN5	879 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	OR4K1	Q8NGD4	311 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	RHEBL1	Q8TAI7	183 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	EPS8L3	Q8TE67	593 aa	Known RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	AEN	Q8WTP8	325 aa	Known RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	SLC13A3	Q8WWT9	602 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	ISL2	Q96A47	359 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MTBP	Q96DY7	904 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	PHF21B	Q96EK2	531 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MOCOS	Q96EN8	888 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MMAB	Q96EY8	250 aa	Predicted RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	AIF1L	Q9BQI0	150 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	CD244	Q9BZW8	370 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	PELI2	Q9HAT8	420 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	SLC22A11	Q9NSA0	550 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	XPR1	Q9UBH6	696 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	OPTC	Q9UBM4	332 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	TCFL5	Q9UL49	500 aa		9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	MRPS2	Q9Y399	296 aa	Known RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	PTRH2	Q9Y3E5	179 aa	Known RBP	9.36	□□□□□ -0.91
CALD1-223	ENST00000496024	KCNE1B	A0A087WTH5	132 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024		A0A1W2PPM1	405 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024		K7EPI3	171 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	TXNDC9	O14530	226 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	NDUFS4	O43181	175 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	CNOT3	O75175	753 aa	Known RBP	9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	SMIM24	O75264	130 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	RBP1	P09455	135 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	RAB40AL	P0C0E4	278 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	SLC35G6	P0C7Q6	338 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	PYGB	P11216	843 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	PIM1	P11309	404 aa	Predicted RBP	9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	COL6A2	P12110	1019 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	KRT15	P19012	456 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	FBL	P22087	321 aa	Known RBP	9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	OTX2	P32243	289 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	HNF4A	P41235	474 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	IRF8	Q02556	426 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	RELA	Q04206	551 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	IFFO1	Q0D2I5	559 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	IL10RA	Q13651	578 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	SLBP	Q14493	270 aa	Known RBP eCLIP	9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	TBR1	Q16650	682 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	NDUFA9	Q16795	377 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	TSNAXIP1	Q2TAA8	658 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	XKR6	Q5GH73	641 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	EMB	Q6PCB8	327 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	TIFAB	Q6ZNK6	161 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	SLCO4C1	Q6ZQN7	724 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	COX15	Q7KZN9	410 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	OVCH1	Q7RTY7	1134 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	PRSS41	Q7RTY9	318 aa		9.35	□□□□□ -0.91
CALD1-223	ENST00000496024	LRRC70	Q7Z2Q7	622 aa		9.35	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms