RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ROPN1LQ96C74 230 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PANX1Q96RD7 426 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RBM4BQ9BQ04 359 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 COPS4Q9BT78 406 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RBM4Q9BWF3 364 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FBXO10Q9UK96 956 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KCNK6Q9Y257 313 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 EP300Q09472 2414 aaPredicted RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KERAO60938 352 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ERAL1O75616 437 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 VNN2O95498 520 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IFNA16P05015 189 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PSKH1P11801 424 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 POLR2JP52435 117 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SRP54P61011 504 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DHCR24Q15392 516 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IER5LQ5T953 404 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MANEALQ5VSG8 457 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NCEH1Q6PIU2 408 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TPRG1Q6ZUI0 275 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CPSF7Q8N684 471 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KRTCAP2Q8N6L1 136 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SLC43A3Q8NBI5 491 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CSGALNACT1Q8TDX6 532 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DOK4Q8TEW6 326 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PMEPA1Q969W9 287 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LRCH3Q96II8 777 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MKRN2Q9H000 416 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SPRTNQ9H040 489 aaPredicted RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MAT2BQ9NZL9 334 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TRPC4Q9UBN4 977 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TNPO3Q9Y5L0 923 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PRUNE2Q8WUY3 3088 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PRORSD1PA6NEY8 169 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PDPK1O15530 556 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PLOD3O60568 738 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DIRAS1O95057 198 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 F11P03951 625 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PBX2P40425 430 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CRATP43155 626 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CCDC58Q4VC31 144 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ERICH5Q6P6B1 374 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 VITQ6UXI7 678 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CERS6Q6ZMG9 384 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TMPRSS11AQ6ZMR5 421 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF605Q86T29 641 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FAM20CQ8IXL6 584 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NXPE1Q8N323 547 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BPIFB1Q8TDL5 484 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 STON2Q8WXE9 905 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NARS2Q96I59 477 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SGK2Q9HBY8 427 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TAS2R9Q9NYW1 312 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IL17CQ9P0M4 197 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SNX7Q9UNH6 387 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DUSP12Q9UNI6 340 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 EFCAB14O75071 495 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR7A10O76100 309 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CCNYL3P0C7X3 344 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RRM2P31350 389 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HMGCLP35914 325 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CHI3L1P36222 383 aaPredicted RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MED22Q15528 200 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 AAK1Q2M2I8 961 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ATAT1Q5SQI0 421 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GOLGA7Q7Z5G4 137 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HMGN2P46Q86SG4 172 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PROSER1Q86XN7 944 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MRPL43Q8N983 215 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR5H6Q8NGV6 325 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TMBIM1Q969X1 311 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FUBP1Q96AE4 644 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DSN1Q9H410 356 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LRTM1Q9HBL6 345 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CCM2LQ9NUG4 571 aaPredicted RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KCTD5Q9NXV2 234 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MAGEL2Q9UJ55 1249 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TBX21Q9UL17 535 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BAIAP2Q9UQB8 552 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ASB1Q9Y576 335 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SBF1O95248 1867 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PLD2O14939 933 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 XPNPEP2O43895 674 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SERPINA1P01009 418 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 S100A9P06702 114 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 EPORP19235 508 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FSHRP23945 695 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF33AQ06730 810 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LAPTM5Q13571 262 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MRPL58Q14197 206 aaKnown RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RFTN1Q14699 578 aaPredicted RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF542PQ5EBM4 170 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 C6orf141Q5SZD1 244 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 USP43Q70EL4 1123 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LIMS2Q7Z4I7 341 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TMEM102Q8N9M5 508 aaPredicted RBP10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ADAMTS16Q8TE57 1224 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MYDGFQ969H8 173 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KIAA1191Q96A73 305 aa10.41□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 C14orf119Q9NWQ9 140 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms