RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 KCNE2Q9Y6J6 123 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 FASNP49327 2511 aaKnown RBP14.07□□□□□ -0.16
USP4-212ENST00000486549 TXNDC9O14530 226 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 OR1F1O43749 312 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 STK16O75716 305 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 C1QL1O75973 258 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 IPO13O94829 963 aaKnown RBP14.06□□□□□ -0.16
USP4-212ENST00000486549 SERPIND1P05546 499 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 SNRPAP09012 282 aaKnown RBP14.06□□□□□ -0.16
USP4-212ENST00000486549 VARSP26640 1264 aaKnown RBP14.06□□□□□ -0.16
USP4-212ENST00000486549 CDC16Q13042 620 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 ACAP2Q15057 778 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 CDKL4Q5MAI5 379 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 LGSNQ5TDP6 509 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 NXPE4Q6UWF7 544 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 ASPGQ86U10 573 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 TBC1D19Q8N5T2 526 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 MFSD9Q8NBP5 474 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 ZNF740Q8NDX6 193 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 ZCCHC10Q8TBK6 192 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 ISL2Q96A47 359 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 THAP11Q96EK4 314 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 SCYL1Q96KG9 808 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 CCDC77Q9BR77 488 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 ENAMQ9NRM1 1142 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 SLC22A11Q9NSA0 550 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 ZNF358Q9NW07 568 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 CPSF2Q9P2I0 782 aaKnown RBP14.06□□□□□ -0.16
USP4-212ENST00000486549 PSMC3IPQ9P2W1 217 aaPredicted RBP14.06□□□□□ -0.16
USP4-212ENST00000486549 PTRH2Q9Y3E5 179 aaKnown RBP14.06□□□□□ -0.16
USP4-212ENST00000486549 ATMQ13315 3056 aa14.06□□□□□ -0.16
USP4-212ENST00000486549 KCNE1BA0A087WTH5 132 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 TRBC2A0A5B9 178 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 SMIM23A6NLE4 172 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 SYCE1LA8MT33 242 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 B8ZZF3 427 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 CNOT3O75175 753 aaKnown RBP14.05□□□□□ -0.16
USP4-212ENST00000486549 PIM1P11309 404 aaPredicted RBP14.05□□□□□ -0.16
USP4-212ENST00000486549 GFAPP14136 432 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 GNAZP19086 355 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 FBLP22087 321 aaKnown RBP14.05□□□□□ -0.16
USP4-212ENST00000486549 DEKP35659 375 aaKnown RBP14.05□□□□□ -0.16
USP4-212ENST00000486549 GGT5P36269 586 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 FOLR3P41439 243 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 AGTR2P50052 363 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 REEP5Q00765 189 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 LY6DQ14210 128 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 RBBP5Q15291 538 aaKnown RBP14.05□□□□□ -0.16
USP4-212ENST00000486549 CRTC2Q53ET0 693 aaPredicted RBP14.05□□□□□ -0.16
USP4-212ENST00000486549 BORAQ6PGQ7 559 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 ADGRD1Q6QNK2 874 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 COX15Q7KZN9 410 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 KLHDC8AQ8IYD2 350 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 CAMKVQ8NCB2 501 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 OR4K1Q8NGD4 311 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 RHEBL1Q8TAI7 183 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 SLC13A3Q8WWT9 602 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.05□□□□□ -0.16
USP4-212ENST00000486549 GPR78Q96P69 363 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 AIF1LQ9BQI0 150 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 YIPF2Q9BWQ6 316 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 ADNPQ9H2P0 1102 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 ZNF304Q9HCX3 659 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 CTSFQ9UBX1 484 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 TBK1Q9UHD2 729 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 PTBP2Q9UKA9 531 aaKnown RBP14.05□□□□□ -0.16
USP4-212ENST00000486549 POLHQ9Y253 713 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 MRPS2Q9Y399 296 aaKnown RBP14.05□□□□□ -0.16
USP4-212ENST00000486549 ASB1Q9Y576 335 aa14.05□□□□□ -0.16
USP4-212ENST00000486549 PIEZO2Q9H5I5 2752 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 SCN3AQ9NY46 2000 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 A0A0A6YYC8 382 aaPredicted RBP14.04□□□□□ -0.16
USP4-212ENST00000486549 IQANK1A0A1B0GTG1 560 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 I3L1I5 382 aaPredicted RBP14.04□□□□□ -0.16
USP4-212ENST00000486549 FFAR3O14843 346 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 CLGNO14967 610 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 GPR42O15529 346 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 NDUFS4O43181 175 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 SHBGP04278 402 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 SLC35G6P0C7Q6 338 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 OTX2P32243 289 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 SLCO1A2P46721 670 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 EMP3P54852 163 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 SNRPNP63162 240 aaKnown RBP14.04□□□□□ -0.16
USP4-212ENST00000486549 SLBPQ14493 270 aaKnown RBP eCLIP14.04□□□□□ -0.16
USP4-212ENST00000486549 PDK4Q16654 411 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 NDUFA9Q16795 377 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 PFKFB4Q16877 469 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 UGT8Q16880 541 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 ERCC6LQ2NKX8 1250 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 LINC00303Q3SY05 128 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 TECRLQ5HYJ1 363 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 GARNL3Q5VVW2 1013 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 MRPL14Q6P1L8 145 aaKnown RBP14.04□□□□□ -0.16
USP4-212ENST00000486549 PRMT9Q6P2P2 845 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 SHISA6Q6ZSJ9 500 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 OVCH1Q7RTY7 1134 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 LRRC70Q7Z2Q7 622 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 TMEM151BQ8IW70 566 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 KCT2Q8NC54 265 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms