RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 NEIL2Q969S2 332 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 NACC2Q96BF6 587 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 MIEF2Q96C03 454 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 TRIM44Q96DX7 344 aaPredicted RBP12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 MMABQ96EY8 250 aaPredicted RBP12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 UBXN10Q96LJ8 280 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 FER1L6-AS2Q96M78 137 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 EGFL8Q99944 293 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 YIPF2Q9BWQ6 316 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 DRC3Q9H069 523 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 TRPC4Q9UBN4 977 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 ANAPC2Q9UJX6 822 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 NXT1Q9UKK6 140 aaKnown RBP12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 SLC22A14Q9Y267 594 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 HS3ST3B1Q9Y662 390 aa12.11□□□□□ -0.47
PRPF40A-203ENST00000448428 BOD1L1Q8NFC6 3051 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 AGPSO00116 658 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 SOCS6O14544 535 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 TAPBPO15533 448 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 OR1F1O43749 312 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 IGHEP01854 428 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 CD1DP15813 335 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 GDF5P43026 501 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 HNMTP50135 292 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 KLRB1Q12918 225 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 NAB1Q13506 487 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 TGFBIQ15582 683 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 OR4D1Q15615 310 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 SYT16Q17RD7 645 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 TMEM214Q6NUQ4 689 aaKnown RBP12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 KIRREL2Q6UWL6 708 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 FRA10AC1Q70Z53 315 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 ASPGQ86U10 573 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 RELL1Q8IUW5 271 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 KCT2Q8NC54 265 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 CAMKVQ8NCB2 501 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 ZNF740Q8NDX6 193 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 OR9A4Q8NGU2 314 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 SLC13A3Q8WWT9 602 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 RHBDF1Q96CC6 855 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 MRRFQ96E11 262 aaKnown RBP12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 MOCOSQ96EN8 888 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 TSNARE1Q96NA8 513 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 MESP1Q9BRJ9 268 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 SARGQ9BW04 601 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 NUDT9Q9BW91 350 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 SPNS1Q9H2V7 528 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 SEMA3GQ9NS98 782 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 NINJ2Q9NZG7 142 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 MTRF1LQ9UGC7 380 aaKnown RBP12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 MAP4K5Q9Y4K4 846 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 SCN2AQ99250 2005 aa12.1□□□□□ -0.47
PRPF40A-203ENST00000448428 TRBC2A0A5B9 178 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 HMX2A2RU54 273 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 NCF1BA6NI72 391 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 NCF1CA8MVU1 366 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 PRPF4O43172 522 aaKnown RBP eCLIP12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 SLC35E2BP0CK96 405 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 NCF1P14598 390 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 ECHS1P30084 290 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 CASRP41180 1078 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 KCNC1P48547 511 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 ATP6V0D1P61421 351 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 MAT1AQ00266 395 aaKnown RBP12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 DLG1Q12959 904 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 RAPSNQ13702 412 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 NXPE4Q6UWF7 544 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 PRSS41Q7RTY9 318 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 CMC1Q7Z7K0 106 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 GPSM1Q86YR5 675 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 KLHDC8AQ8IYD2 350 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 SHISA5Q8N114 240 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 GALNT16Q8N428 558 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 TEX19Q8NA77 164 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 CLEC1AQ8NC01 280 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 CRB3Q9BUF7 120 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 FAM129AQ9BZQ8 928 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 TRIM4Q9C037 500 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 TGIF2Q9GZN2 237 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 MKKSQ9NPJ1 570 aaPredicted RBP12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 ATP13A2Q9NQ11 1180 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 GPR83Q9NYM4 423 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 C3orf18Q9UK00 162 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 FBXL4Q9UKA2 621 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 DYRK1BQ9Y463 629 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 KCNE2Q9Y6J6 123 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 FASNP49327 2511 aaKnown RBP12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 CFAP46Q8IYW2 2715 aa12.09□□□□□ -0.47
PRPF40A-203ENST00000448428 H0YIG0 161 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 ALOX12BO75342 701 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 WDR47O94967 919 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 NSA2O95478 260 aaKnown RBP12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 IL1RNP18510 177 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 CRABP2P29373 138 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 PHBP35232 272 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 GGT5P36269 586 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 SCTRP47872 440 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 AVPR1BP47901 424 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 SLC6A12P48065 614 aa12.08□□□□□ -0.48
PRPF40A-203ENST00000448428 EMP2P54851 167 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms