RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CADM2Q8N3J6 435 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 BBS10Q8TAM1 723 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 NT5C3BQ969T7 300 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 MAPKAP1Q9BPZ7 522 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 ADAP2Q9NPF8 381 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 FANCFQ9NPI8 374 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 LAMTOR5O43504 91 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 ZNF8P17098 575 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 HNRNPA2B1P22626 353 aaKnown RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 RCVRNP35243 200 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 RPS13P62277 151 aaKnown RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 RHDQ02161 417 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 DAG1Q14118 895 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 KLHL12Q53G59 568 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 PRRT3Q5FWE3 981 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 ASPGQ86U10 573 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 CDK15Q96Q40 435 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 CDADC1Q9BWV3 514 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 TBL1XR1Q9BZK7 514 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 WDR12Q9GZL7 423 aaKnown RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 PAIP1Q9H074 479 aaKnown RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 TPT1P8Q9HAU6 139 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 RNF11Q9Y3C5 154 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 MAGEB3O15480 346 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 DUX1O43812 170 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 RCBTB2O95199 551 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 HBQ1P09105 142 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 EPCAMP16422 314 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 CEP78Q5JTW2 689 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 RSBN1Q5VWQ0 802 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 FBXO15Q8NCQ5 510 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-205ENST00000414879 SCAMP4Q969E2 229 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 ZNF354BQ96LW1 612 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 SLC7A8Q9UHI5 535 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 ECM29Q5VYK3 1845 aa11.59□□□□□ -0.55
PTPRF-205ENST00000414879 C1orf226A1L170 272 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 ABLIM3O94929 683 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 TIA1P31483 386 aaKnown RBP eCLIP11.58□□□□□ -0.55
PTPRF-205ENST00000414879 CD68P34810 354 aaPredicted RBP11.58□□□□□ -0.55
PTPRF-205ENST00000414879 TNFRSF4P43489 277 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 RAB28P51157 221 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 MTTPP55157 894 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 ST3GAL3Q11203 375 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 CNTN4Q8IWV2 1026 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 OR4K14Q8NGD5 310 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 FAM3CQ92520 227 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 GAL3ST4Q96RP7 486 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 ZBP1Q9H171 429 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 PAIP2BQ9ULR5 123 aaKnown RBP11.58□□□□□ -0.55
PTPRF-205ENST00000414879 AP1M2Q9Y6Q5 423 aa11.58□□□□□ -0.55
PTPRF-205ENST00000414879 PEX12O00623 359 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 ARPC2O15144 300 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 SEMA4FO95754 770 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 C7P10643 843 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 CLCN2P51788 898 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 MTPNP58546 118 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 KCNC4Q03721 635 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 TCTE1Q5JU00 501 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 PDSS1Q5T2R2 415 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 OR4F3Q6IEY1 312 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 ARHGAP12Q8IWW6 846 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 HRASLS2Q9NWW9 162 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 LOC100506127A0A0U1RQW1 187 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 TRMUO75648 421 aaKnown RBP11.58□□□□□ -0.56
PTPRF-205ENST00000414879 SYPP08247 313 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 G6PDP11413 515 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 CCT3P49368 545 aaKnown RBP11.58□□□□□ -0.56
PTPRF-205ENST00000414879 TMED10P49755 219 aaKnown RBP11.58□□□□□ -0.56
PTPRF-205ENST00000414879 GSK3BP49841 420 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 MVKQ03426 396 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 RBM48Q5RL73 367 aaKnown RBP11.58□□□□□ -0.56
PTPRF-205ENST00000414879 OR2T5Q6IEZ7 315 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 NOXRED1Q6NXP6 359 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 DNM1P34Q6PK57 102 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 OR2T29Q8NH02 315 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 SUN3Q8TAQ9 357 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 ERVK-11Q9UQG0 969 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 CPED1A4D0V7 1026 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 PRAMEF26H0Y7S4 382 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 PGRMC2O15173 223 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 SEC24AO95486 1093 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 FPR1P21462 350 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 PREPP48147 710 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 SLC5A9Q2M3M2 681 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 AMZ1Q400G9 498 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 UNC50Q53HI1 259 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 TCEAL5Q5H9L2 206 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 PSAPL1Q6NUJ1 521 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 NXPE4Q6UWF7 544 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 SLC34A3Q8N130 599 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 THRSPQ92748 146 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 BHLHE41Q9C0J9 482 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-205ENST00000414879 POLR2J3Q9H1A7 115 aaKnown RBP11.58□□□□□ -0.56
PTPRF-205ENST00000414879 RSPH9Q9H1X1 276 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-205ENST00000414879 EPB41L1Q9H4G0 881 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 PLGRKTQ9HBL7 147 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 PDE7BQ9NP56 450 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-205ENST00000414879 MTMR10Q9NXD2 777 aa11.58□□□□□ -0.56
PTPRF-205ENST00000414879 CIDEBQ9UHD4 219 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms