RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FAM160A2Q8N612 972 aaPredicted RBP17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 OR52E1Q8NGJ3 308 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 STARD8Q92502 1023 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC22A18Q96BI1 424 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 LRRC58Q96CX6 371 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC6A18Q96N87 628 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 CENPKQ9BS16 269 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 MENTQ9BUN1 341 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 NT5DC2Q9H857 520 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 SPATA6Q9NWH7 488 aaPredicted RBP17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 OR6C2Q9NZP2 312 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 RUVBL1Q9Y265 456 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 CCDC163A0A0D9SF12 145 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 KIR2DS5A0A0G2JLQ3 304 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 A0A0G2JNG1 304 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 KIR2DS3K7RE56 304 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 TCN1P20061 433 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 CD22P20273 847 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 AK4P27144 223 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 HOXA6P31267 233 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 NEK2P51955 445 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 NME5P56597 212 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 EEFSECP57772 596 aaKnown RBP17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 DDX39BQ13838 428 aaKnown RBP17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 FZD2Q14332 565 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 KIR2DS5Q14953 304 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 WDR45BQ5MNZ6 344 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 DPY30Q9C005 99 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 ACTR3BQ9P1U1 418 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 PPT2Q9UMR5 302 aa17.51■□□□□ 0.39
CCDC88C-203ENST00000389856 CCDC154A6NI56 674 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 FXYD1O00168 92 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 G6PDP11413 515 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 CDH1P12830 882 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 MSX2P35548 267 aaPredicted RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 GRK3P35626 688 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 PXNP49023 591 aaPredicted RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 ACSM2AQ08AH3 577 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 EIF2B5Q13144 721 aaKnown RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 VPS26BQ4G0F5 336 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 AASDHQ4L235 1098 aaPredicted RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 CATSPEREQ5SY80 951 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 ACSM2BQ68CK6 577 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 UGT2A3Q6UWM9 527 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 TMIGD1Q6UXZ0 262 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 C11orf74Q86VG3 221 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 SLC15A3Q8IY34 581 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 PACRGLQ8N7B6 248 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 ABHD11Q8NFV4 315 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 LCN9Q8WX39 176 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 ORAI3Q9BRQ5 295 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 POT1Q9NUX5 634 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 PCM1Q15154 2024 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 NME4O00746 187 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 TXNDC9O14530 226 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 SCAMP1O15126 338 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 HNRNPRO43390 633 aaKnown RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 PRMT3O60678 531 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 VIPP01282 170 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 DCNP07585 359 aaKnown RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 GSTM2P28161 218 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 PRDX1Q06830 199 aaKnown RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 SIGLEC14Q08ET2 396 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 FAM219BQ5XKK7 198 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 LAYNQ6UX15 382 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 TAF8Q7Z7C8 310 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 RBM12BQ8IXT5 1001 aaKnown RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 LIX1Q8N485 282 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 DPP10Q8N608 796 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 ANKFN1Q8N957 763 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 FAM156AQ8NDB6 213 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 TTLQ8NG68 377 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 HUS1BQ8NHY5 278 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 MTERF1Q99551 399 aaKnown RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 PCDHAC1Q9H158 963 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 CCM2LQ9NUG4 571 aaPredicted RBP17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 AHSPQ9NZD4 102 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 ICKQ9UPZ9 632 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 PCDHA9Q9Y5H5 950 aa17.5■□□□□ 0.39
CCDC88C-203ENST00000389856 A6NCN8 305 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 EIF4E1BA6NMX2 242 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 K7ESF4 209 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 IL6P05231 212 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 GPIP06744 558 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 UMPSP11172 480 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 FCGR1AP12314 374 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 BMP2P12643 396 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 IL10P22301 178 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 SLC6A2P23975 617 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 PTX3P26022 381 aaPredicted RBP17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 CMPK1P30085 196 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 ASMTP46597 345 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 UFM1P61960 85 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 NFYCQ13952 458 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 ELOCQ15369 112 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 AMIGO1Q86WK6 493 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 PTRH1Q86Y79 214 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 FRMD1Q8N878 549 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 EME1Q96AY2 570 aa17.49■□□□□ 0.39
CCDC88C-203ENST00000389856 SLC45A3Q96JT2 553 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms