RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 HAT1O14929 419 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 RASAL1O95294 804 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 CRYABP02511 175 aaKnown RBP19.96■□□□□ 0.79
VPS53-216ENST00000574029 UQCRHP07919 91 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 PAMP19021 973 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 MST1P26927 711 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 MAT1AQ00266 395 aaKnown RBP19.96■□□□□ 0.79
VPS53-216ENST00000574029 ART3Q13508 389 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 TTLL9Q3SXZ7 439 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 AMER2Q8N7J2 671 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 GIMAP7Q8NHV1 300 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 MAIP1Q8WWC4 291 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 ASB11Q8WXH4 323 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 EBNA1BP2Q99848 306 aaKnown RBP19.96■□□□□ 0.79
VPS53-216ENST00000574029 KLHL42Q9P2K6 505 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 MED16Q9Y2X0 877 aa19.96■□□□□ 0.79
VPS53-216ENST00000574029 KLF2Q9Y5W3 355 aaPredicted RBP19.96■□□□□ 0.79
VPS53-216ENST00000574029 OR5H15A6NDH6 313 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 AVILO75366 819 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 FGGP02679 453 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 MPC1LP0DKB6 136 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 C8orf89P0DMQ9 161 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 AVPR1BP47901 424 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 SNRPNP63162 240 aaKnown RBP19.95■□□□□ 0.78
VPS53-216ENST00000574029 NDUFA9Q16795 377 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 KCTD19Q17RG1 926 aaPredicted RBP19.95■□□□□ 0.78
VPS53-216ENST00000574029 ABHD17BQ5VST6 288 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 TMEM207Q6UWW9 146 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 ZNF662Q6ZS27 426 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 ADCK2Q7Z695 626 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 ITLN2Q8WWU7 325 aaPredicted RBP19.95■□□□□ 0.78
VPS53-216ENST00000574029 STMN3Q9NZ72 180 aa19.95■□□□□ 0.78
VPS53-216ENST00000574029 H0YIG0 161 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 GFYI3L273 518 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 PRAMEF2O60811 474 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 UNC5CO95185 931 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 CYC1P08574 325 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 SKIV2L2P42285 1042 aaKnown RBP19.94■□□□□ 0.78
VPS53-216ENST00000574029 MAGEA6P43360 314 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 CCZ1BP86790 482 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 CCZ1P86791 482 aaPredicted RBP19.94■□□□□ 0.78
VPS53-216ENST00000574029 NAA30Q147X3 362 aaPredicted RBP19.94■□□□□ 0.78
VPS53-216ENST00000574029 CYHR1Q6ZMK1 362 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 PLD3Q8IV08 490 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 MCEMP1Q8IX19 187 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 PRELID2Q8N945 189 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 SUN3Q8TAQ9 357 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 METTL21AQ8WXB1 218 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 VN1R1Q9GZP7 353 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 RUBCNLQ9H714 662 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 SUCOQ9UBS9 1254 aaKnown RBP19.94■□□□□ 0.78
VPS53-216ENST00000574029 SEC14L3Q9UDX4 400 aa19.94■□□□□ 0.78
VPS53-216ENST00000574029 ABCA12Q86UK0 2595 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.93■□□□□ 0.78
VPS53-216ENST00000574029 TRGV8A0A0C4DH27 118 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 H7BY64 318 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 NSA2O95478 260 aaKnown RBP19.93■□□□□ 0.78
VPS53-216ENST00000574029 SYF2O95926 243 aaKnown RBP19.93■□□□□ 0.78
VPS53-216ENST00000574029 MYBL2P10244 700 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 ENO3P13929 434 aaPredicted RBP19.93■□□□□ 0.78
VPS53-216ENST00000574029 ELAVL4P26378 380 aaKnown RBP19.93■□□□□ 0.78
VPS53-216ENST00000574029 CA7P43166 264 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 SARNPP82979 210 aaKnown RBP19.93■□□□□ 0.78
VPS53-216ENST00000574029 ZNF33BQ06732 778 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 CUL1Q13616 776 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.93■□□□□ 0.78
VPS53-216ENST00000574029 ZNF470Q6ECI4 717 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 ZNF549Q6P9A3 640 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 CAND1Q86VP6 1230 aaKnown RBP19.93■□□□□ 0.78
VPS53-216ENST00000574029 SPNS2Q8IVW8 549 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 OR9A4Q8NGU2 314 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 KCNJ9Q92806 393 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 CCDC120Q96HB5 630 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 PRAP1Q96NZ9 151 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 CYTH2Q99418 400 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 ABCF3Q9NUQ8 709 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 TMEM184CQ9NVA4 438 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 TEKT2Q9UIF3 430 aa19.93■□□□□ 0.78
VPS53-216ENST00000574029 KCNE1BA0A087WTH5 132 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 FAM237BA0A1B0GVD1 139 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 CTAGE9A4FU28 777 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 CCL21O00585 134 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 ZBTB14O43829 449 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 NRDCO43847 1150 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 F7P08709 466 aaPredicted RBP19.92■□□□□ 0.78
VPS53-216ENST00000574029 GRNP28799 593 aaKnown RBP19.92■□□□□ 0.78
VPS53-216ENST00000574029 IMPA1P29218 277 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 TERF1P54274 439 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 SRSF11Q05519 484 aaKnown RBP19.92■□□□□ 0.78
VPS53-216ENST00000574029 DHX34Q14147 1143 aaKnown RBP19.92■□□□□ 0.78
VPS53-216ENST00000574029 TRIP13Q15645 432 aaPredicted RBP19.92■□□□□ 0.78
VPS53-216ENST00000574029 LONRF1Q17RB8 773 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 THEMIS2Q5TEJ8 643 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 PLAG1Q6DJT9 500 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 H3F3CQ6NXT2 135 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 CASC4Q6P4E1 433 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 MYO7BQ6PIF6 2116 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 VN1R4Q7Z5H5 301 aa19.92■□□□□ 0.78
VPS53-216ENST00000574029 CPEB2Q7Z5Q1 589 aaKnown RBP19.92■□□□□ 0.78
VPS53-216ENST00000574029 DENND6AQ8IWF6 608 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms