RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SLC6A20Q9NP91 592 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 FSCN3Q9NQT6 498 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 NMRK1Q9NWW6 199 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 C1orf109Q9NX04 203 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 RAB23Q9ULC3 237 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 PPT2Q9UMR5 302 aa13.15□□□□□ -0.3
CCDC40-209ENST00000573474 SDK1Q7Z5N4 2213 aa13.15□□□□□ -0.31
CCDC40-209ENST00000573474 TRBC2A0A5B9 178 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 MAGEB17A8MXT2 336 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 PATE3B3GLJ2 98 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 TNFSF14O43557 240 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 SEC22BO75396 215 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 ATP5HO75947 161 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 UBXN7O94888 489 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 ALDOCP09972 364 aaKnown RBP13.14□□□□□ -0.31
CCDC40-209ENST00000573474 IDO1P14902 403 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 TYRP1P17643 537 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 AMD1P17707 334 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 PRDX6P30041 224 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 GRIA3P42263 894 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 CCT8P50990 548 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 EPHA4P54764 986 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 RPS6KA2Q15349 733 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 ZNF425Q6IV72 752 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 SPESP1Q6UW49 350 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 TREML1Q86YW5 311 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 FAM20CQ8IXL6 584 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 TTLQ8NG68 377 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 METTL2AQ96IZ6 378 aaKnown RBP13.14□□□□□ -0.31
CCDC40-209ENST00000573474 IL21RQ9HBE5 538 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 DMRT3Q9NQL9 472 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 ARL8BQ9NVJ2 186 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 AIG1Q9NVV5 245 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 ANKMY1Q9P2S6 941 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 VPS29Q9UBQ0 182 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 SLC12A4Q9UP95 1085 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 EIF3LQ9Y262 564 aaKnown RBP13.14□□□□□ -0.31
CCDC40-209ENST00000573474 TMED5Q9Y3A6 229 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 KLK4Q9Y5K2 254 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 R4GN57 208 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 KMT2EQ8IZD2 1858 aa13.14□□□□□ -0.31
CCDC40-209ENST00000573474 MUC3AQ02505 3323 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 FEZF1A0PJY2 475 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 ANKDD1BA6NHY2 528 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 PSMD12O00232 456 aaPredicted RBP13.13□□□□□ -0.31
CCDC40-209ENST00000573474 OR1F1O43749 312 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 NUDT21O43809 227 aaKnown RBP13.13□□□□□ -0.31
CCDC40-209ENST00000573474 PROS1P07225 676 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 PCSK2P16519 638 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 PTX3P26022 381 aaPredicted RBP13.13□□□□□ -0.31
CCDC40-209ENST00000573474 PIK3R1P27986 724 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 GSTM2P28161 218 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 MPLP40238 635 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 SCTRP47872 440 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 MRPL19P49406 292 aaKnown RBP13.13□□□□□ -0.31
CCDC40-209ENST00000573474 RPS13P62277 151 aaKnown RBP13.13□□□□□ -0.31
CCDC40-209ENST00000573474 RFTN2Q52LD8 501 aaPredicted RBP13.13□□□□□ -0.31
CCDC40-209ENST00000573474 IL23RQ5VWK5 629 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 ZCCHC8Q6NZY4 707 aaKnown RBP13.13□□□□□ -0.31
CCDC40-209ENST00000573474 FIGLAQ6QHK4 219 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 PAQR7Q86WK9 346 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 GATAD2AQ86YP4 633 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 SLC35F3Q8IY50 421 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 MIER2Q8N344 545 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 RNF175Q8N4F7 328 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 OR4C6Q8NH72 309 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 ZUFSPQ96AP4 578 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 CMTM5Q96DZ9 223 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 SERPINI1Q99574 410 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 C1orf50Q9BV19 199 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 SARGQ9BW04 601 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 ARRDC1-AS1Q9H2J1 176 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 TXLNGQ9NUQ3 528 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 ASIC5Q9NY37 505 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 NOP53Q9NZM5 478 aaKnown RBP13.13□□□□□ -0.31
CCDC40-209ENST00000573474 LRIT1Q9P2V4 623 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 TAGLN3Q9UI15 199 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 GPR45Q9Y5Y3 372 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 RNF215Q9Y6U7 377 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 CACNA1EQ15878 2313 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 PCM1Q15154 2024 aa13.13□□□□□ -0.31
CCDC40-209ENST00000573474 A0A0J9YY10 115 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 HAT1O14929 419 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 KHNYNO15037 678 aaKnown RBP13.12□□□□□ -0.31
CCDC40-209ENST00000573474 ZW10O43264 779 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 LCMT2O60294 686 aaKnown RBP13.12□□□□□ -0.31
CCDC40-209ENST00000573474 CBX6O95503 412 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 T-ENOLP0DO92 83 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 THRAP10827 490 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 ESRRAP11474 423 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-209ENST00000573474 ACPPP15309 386 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 GLB1P16278 677 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 GPX3P22352 226 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 MAPK1P28482 360 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 AHRP35869 848 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 GPR3P46089 330 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 ACADVLP49748 655 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 DIO3P55073 304 aa13.12□□□□□ -0.31
CCDC40-209ENST00000573474 RPL38P63173 70 aaKnown RBP13.12□□□□□ -0.31
CCDC40-209ENST00000573474 RELAQ04206 551 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms