RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 THOC6Q86W42 341 aaKnown RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 RAB43Q86YS6 212 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 SPATA6LQ8N4H0 392 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 CAMKVQ8NCB2 501 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 ABHD11Q8NFV4 315 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 RHEBL1Q8TAI7 183 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 UHMK1Q8TAS1 419 aaKnown RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 UBLCP1Q8WVY7 318 aaPredicted RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 ISL2Q96A47 359 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 FKBP10Q96AY3 582 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 PTERQ96BW5 349 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 RHBDF1Q96CC6 855 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 OR2A5Q96R48 311 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 AIF1LQ9BQI0 150 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 VPS11Q9H270 941 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 ALG9Q9H6U8 611 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 PPCSQ9HAB8 311 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 PELI2Q9HAT8 420 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 STARD5Q9NSY2 213 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 GPRC5BQ9NZH0 403 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 CDC14AQ9UNH5 594 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 POLHQ9Y253 713 aa12.41□□□□□ -0.42
CLK3-224ENST00000568605 FARSAQ9Y285 508 aaKnown RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 MRPS18BQ9Y676 258 aaKnown RBP12.41□□□□□ -0.42
CLK3-224ENST00000568605 KCNE1BA0A087WTH5 132 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 LOC105369274A0A096LPK9 316 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 LOC102723532A0A0G2JNH3 316 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 ALDOAP04075 364 aaKnown RBP12.4□□□□□ -0.42
CLK3-224ENST00000568605 SNRPAP09012 282 aaKnown RBP12.4□□□□□ -0.42
CLK3-224ENST00000568605 FAM153BP0C7A2 387 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 F8A1P23610 371 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 CXCR2P25025 360 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 FOLR3P41439 243 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 GCGRP47871 477 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 SLC6A12P48065 614 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 SKP1P63208 163 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 CSNK1G2P78368 415 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 CDC16Q13042 620 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 ACAP2Q15057 778 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 FAM153CQ494X1 144 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 NKAIN1Q4KMZ8 207 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 FBXO42Q6P3S6 717 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 BORAQ6PGQ7 559 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 LRRC70Q7Z2Q7 622 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 KLHDC8AQ8IYD2 350 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 CENPLQ8N0S6 344 aaPredicted RBP12.4□□□□□ -0.42
CLK3-224ENST00000568605 OR4N4Q8N0Y3 316 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 LSM14AQ8ND56 463 aaKnown RBP12.4□□□□□ -0.42
CLK3-224ENST00000568605 DCAKDQ8WVC6 231 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 KCTD4Q8WVF5 259 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 NEIL2Q969S2 332 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 WBP1Q96G27 269 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 OR4K3Q96R72 315 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 TXLNGYQ9BZA5 131 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 IGSF5Q9NSI5 407 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 DNAJC11Q9NVH1 559 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 PSMC3IPQ9P2W1 217 aaPredicted RBP12.4□□□□□ -0.42
CLK3-224ENST00000568605 NXT1Q9UKK6 140 aaKnown RBP12.4□□□□□ -0.42
CLK3-224ENST00000568605 TCFL5Q9UL49 500 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 SH2B3Q9UQQ2 575 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 RUVBL1Q9Y265 456 aaKnown RBP12.4□□□□□ -0.42
CLK3-224ENST00000568605 SLC22A14Q9Y267 594 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 DOCK10Q96BY6 2186 aa12.4□□□□□ -0.42
CLK3-224ENST00000568605 MGAQ8IWI9 3026 aa12.4□□□□□ -0.43
CLK3-224ENST00000568605 MED13Q9UHV7 2174 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 TRBC2A0A5B9 178 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 HMX2A2RU54 273 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 CDC14CA4D256 554 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 EIF4E1BA6NMX2 242 aaKnown RBP12.39□□□□□ -0.43
CLK3-224ENST00000568605 TRIM49D1C9J1S8 452 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 CLGNO14967 610 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 STK16O75716 305 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 ALBP02768 609 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 CTSBP07858 339 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 MYBL2P10244 700 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 COL6A2P12110 1019 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 FBLP22087 321 aaKnown RBP12.39□□□□□ -0.43
CLK3-224ENST00000568605 GGT5P36269 586 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 MAGEA12P43365 314 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 CCR10P46092 362 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 CSRP3P50461 194 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 RGS1Q08116 209 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 ERV3-1Q14264 604 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 SLC29A2Q14542 456 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 UGT8Q16880 541 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 PRTGQ2VWP7 1150 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 MLIPQ5VWP3 458 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 ASPGQ86U10 573 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 ISCA2Q86U28 154 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 PLD3Q8IV08 490 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 MFSD9Q8NBP5 474 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 UBTD2Q8WUN7 234 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 THAP4Q8WY91 577 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 NXNL1Q96CM4 212 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 IP6K3Q96PC2 410 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 ATOH8Q96SQ7 321 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 SARGQ9BW04 601 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 DRC3Q9H069 523 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 ANKZF1Q9H8Y5 726 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 WDR54Q9H977 334 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms