RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 HAT1O14929 419 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 CLGNO14967 610 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 SMIM24O75264 130 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 PYGBP11216 843 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 AGXTP21549 392 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 RORAP35398 523 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 STAT5AP42229 794 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 CCT5P48643 541 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 TLE3Q04726 772 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 PDK4Q16654 411 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 PFKFB4Q16877 469 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 C18orf21Q32NC0 220 aaPredicted RBP13.64□□□□□ -0.23
NUP54-216ENST00000514901 PRAMEF17Q5VTA0 474 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 GARNL3Q5VVW2 1013 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 FRMPD2BQ6IN97 320 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 ZNF517Q6ZMY9 492 aaPredicted RBP13.64□□□□□ -0.23
NUP54-216ENST00000514901 DSELQ8IZU8 1212 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 OR4N4Q8N0Y3 316 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 CSNK1A1LQ8N752 337 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 SLC38A9Q8NBW4 561 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 C17orf62Q9BQA9 187 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 EHD1Q9H4M9 534 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 TXLNGQ9NUQ3 528 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 ZNF358Q9NW07 568 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 KCND3Q9UK17 655 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 SH2B3Q9UQQ2 575 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 CACNA1BQ00975 2339 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 PKD1L2Q7Z442 2459 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 TRBC2A0A5B9 178 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 HYKKA2RU49 373 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 C21orf140B9A014 251 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 K7EPI3 171 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 NRP2O60462 931 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 CCNT2O60583 730 aaKnown RBP13.63□□□□□ -0.23
NUP54-216ENST00000514901 EIF2S1P05198 315 aaKnown RBP13.63□□□□□ -0.23
NUP54-216ENST00000514901 CD63P08962 238 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 C1GALT1C1LP0DN25 315 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 PIM1P11309 404 aaPredicted RBP13.63□□□□□ -0.23
NUP54-216ENST00000514901 TAC1P20366 129 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 GCGRP47871 477 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 PCDH1Q08174 1060 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 GPS2Q13227 327 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 SETDB1Q15047 1291 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 PCBP2Q15366 365 aaKnown RBP eCLIP13.63□□□□□ -0.23
NUP54-216ENST00000514901 MUM1Q2TAK8 710 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 PRTGQ2VWP7 1150 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 CATSPEREQ5SY80 951 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 ATG9BQ674R7 924 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 SLCO4C1Q6ZQN7 724 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 SH2D5Q6ZV89 423 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 CROCCP2Q86T23 111 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 CYP4X1Q8N118 509 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 KRT78Q8N1N4 520 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 SNX31Q8N9S9 440 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 MFSD9Q8NBP5 474 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 CAMKVQ8NCB2 501 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 OR2W6PQ8NHA6 318 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 MR1Q95460 341 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 SEC16BQ96JE7 1060 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 GPR87Q9BY21 358 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 GPN2Q9H9Y4 310 aaPredicted RBP13.63□□□□□ -0.23
NUP54-216ENST00000514901 CUTCQ9NTM9 273 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 WDR70Q9NW82 654 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 CPSF2Q9P2I0 782 aaKnown RBP13.63□□□□□ -0.23
NUP54-216ENST00000514901 XPR1Q9UBH6 696 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 OPTCQ9UBM4 332 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 LGALS13Q9UHV8 139 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 PLAAQ9Y263 795 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 PCDHGA4Q9Y5G9 962 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 ZZEF1O43149 2961 aa13.63□□□□□ -0.23
NUP54-216ENST00000514901 DSPP15924 2871 aaKnown RBP13.63□□□□□ -0.23
NUP54-216ENST00000514901 TEX51A0A1B0GUA7 166 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 A0A1W2PPM1 405 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 STX16-NPEPL1H3BU86 382 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 GOLGA8RI6L899 631 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 STX16O14662 325 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 DSCR3O14972 297 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 OR1F1O43749 312 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 GLRA3O75311 464 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 CTSBP07858 339 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 EPB42P16452 691 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 TCN2P20062 427 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 ALAS2P22557 587 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 GSTM2P28161 218 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 CRHR1P34998 444 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 AHRP35869 848 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 PIK3CGP48736 1102 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 TMPRSS3P57727 454 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 DCDP81605 110 aaKnown RBP13.62□□□□□ -0.23
NUP54-216ENST00000514901 REEP5Q00765 189 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 LAPTM5Q13571 262 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 TBCCQ15814 346 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 NDUFA9Q16795 377 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 TMPRSS11BQ86T26 416 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 PLD3Q8IV08 490 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 IQCKQ8N0W5 287 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 ZSCAN1Q8NBB4 408 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 TTLQ8NG68 377 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 ESAMQ96AP7 390 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 TM4SF19Q96DZ7 209 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms