RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ZNF641Q96N77 438 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 RPRD1AQ96P16 312 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 FOXC2Q99958 501 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 NCAPGQ9BPX3 1015 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 TMEM79Q9BSE2 394 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 DDA1Q9BW61 102 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 ADGRE3Q9BY15 652 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 SLC17A9Q9BYT1 436 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 MAGEH1Q9H213 219 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 BLZF1Q9H2G9 400 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 CXXC4Q9H2H0 198 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 LRRN3Q9H3W5 708 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 MRPL40Q9NQ50 206 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 HEYLQ9NQ87 328 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 ARL8BQ9NVJ2 186 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 ARHGEF38Q9NXL2 777 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 IL36AQ9UHA7 158 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 IPO11Q9UI26 975 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 SLCO3A1Q9UIG8 710 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 HPCAL4Q9UM19 191 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 CORO2BQ9UQ03 480 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 NAALADL1Q9UQQ1 740 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 TP53BP1Q12888 1972 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 TNRC6AQ8NDV7 1962 aaKnown RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 RHPN2P1A8MT19 583 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 INAFM1C9JVW0 142 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 F5H423 210 aaPredicted RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 AGPSO00116 658 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 FOXN3O00409 490 aaPredicted RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 KPNA3O00505 521 aaPredicted RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 AREL1O15033 823 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 TOX3O15405 576 aaPredicted RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 KLHL41O60662 606 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 LRCH4O75427 683 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 DAB1O75553 588 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 FYNP06241 537 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 HEXAP06865 529 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 ANXA2P07355 339 aaKnown RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 RHOCP08134 193 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 TRIM49P0CI25 452 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 TRIM49CP0CI26 452 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 SRCP12931 536 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 PDGFRAP16234 1089 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 RHCEP18577 417 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 F8A1P23610 371 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 OR1E1P30953 314 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 CDH5P33151 784 aaPredicted RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 STAT1P42224 750 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 NR4A2P43354 598 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 GABRB2P47870 512 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 CSNK1DP48730 415 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 TAS2R38P59533 333 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 POLR2LP62875 67 aaKnown RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 PPARDQ03181 441 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 ZFP36L1Q07352 338 aaKnown RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 PDCLQ13371 301 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 RAPGEF1Q13905 1077 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 FZD2Q14332 565 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 RFTN1Q14699 578 aaPredicted RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 RBMS2Q15434 407 aaKnown RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 SLC25A52Q3SY17 297 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 CARD16Q5EG05 197 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 FSCBQ5H9T9 825 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 FBXL22Q6P050 247 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 C22orf39Q6P5X5 142 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 RFWD3Q6PCD5 774 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 GCNT7Q6ZNI0 430 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 TAC4Q86UU9 113 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 ZNF677Q86XU0 584 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 ANKRD13BQ86YJ7 626 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 NRSN1Q8IZ57 195 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 RBFAQ8N0V3 343 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 METTL25Q8N6Q8 603 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 RBMXL3Q8N7X1 1067 aaKnown RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 ATP11CQ8NB49 1132 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 C16orf52Q8NHV5 167 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 LMO3Q8TAP4 145 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 ZNF606Q8WXB4 792 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 SEMA4DQ92854 862 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 ART4Q93070 314 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 EEF2KMTQ96G04 330 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 C18orf12Q96KH6 178 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 GDAP1L1Q96MZ0 367 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 ZYG11BQ9C0D3 744 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 SLC25A32Q9H2D1 315 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 TCEAL2Q9H3H9 227 aaPredicted RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 RDH14Q9HBH5 336 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 HAUS2Q9NVX0 235 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 DDIT4Q9NX09 232 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 APOBEC3BQ9UH17 382 aaKnown RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 DNPEPQ9ULA0 475 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 NTNG1Q9Y2I2 539 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 FADS3Q9Y5Q0 445 aa3.84□□□□□ -1.79
USP54-217ENST00000498213 COPG1Q9Y678 874 aaKnown RBP3.84□□□□□ -1.79
USP54-217ENST00000498213 ZNF106Q9H2Y7 1883 aaKnown RBP3.84□□□□□ -1.8
USP54-217ENST00000498213 TSPAN11A1L157 253 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 GOLGA6L4A6NEF3 574 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 B4E171 279 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 GPR89AB7ZAQ6 455 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 PSMD11O00231 422 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms