RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ABI3Q9P2A4 366 aa11.75□□□□□ -0.53
CPSF3-204ENST00000489403 ZKSCAN5Q9Y2L8 839 aa11.75□□□□□ -0.53
CPSF3-204ENST00000489403 MED16Q9Y2X0 877 aa11.75□□□□□ -0.53
CPSF3-204ENST00000489403 SMAPO00193 183 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 TXNDC9O14530 226 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 RASAL1O95294 804 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 SYF2O95926 243 aaKnown RBP11.74□□□□□ -0.53
CPSF3-204ENST00000489403 FGGP02679 453 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 STATHP02808 62 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 C8orf89P0DMQ9 161 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 PAMP19021 973 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 GRNP28799 593 aaKnown RBP11.74□□□□□ -0.53
CPSF3-204ENST00000489403 CDC25BP30305 580 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 ABATP80404 500 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 RELAQ04206 551 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 TRIP13Q15645 432 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-204ENST00000489403 TTLL9Q3SXZ7 439 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 NEPROQ6NW34 567 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 LANCL3Q6ZV70 420 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 PRSS41Q7RTY9 318 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 LRRC56Q8IYG6 542 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-204ENST00000489403 MAIP1Q8WWC4 291 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 ITLN2Q8WWU7 325 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-204ENST00000489403 CCDC120Q96HB5 630 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 TUBB6Q9BUF5 446 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 VN1R1Q9GZP7 353 aa11.74□□□□□ -0.53
CPSF3-204ENST00000489403 FBXO6Q9NRD1 293 aaPredicted RBP11.74□□□□□ -0.53
CPSF3-204ENST00000489403 TRGV8A0A0C4DH27 118 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 IGHV3-20A0A0C4DH32 117 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 OR5H15A6NDH6 313 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 H0YIG0 161 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 H7BY64 318 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 PRAMEF2O60811 474 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 SEC24DO94855 1032 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-204ENST00000489403 UNC5CO95185 931 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 CRYABP02511 175 aaKnown RBP11.73□□□□□ -0.53
CPSF3-204ENST00000489403 MPC1LP0DKB6 136 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ICAM2P13598 275 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 IMPA1P29218 277 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 SKIV2L2P42285 1042 aaKnown RBP11.73□□□□□ -0.53
CPSF3-204ENST00000489403 AVPR1BP47901 424 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 VPS41P49754 854 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 LRBAP50851 2863 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 AP2B1P63010 937 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 CENPEQ02224 2701 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ZNF33BQ06732 778 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ART3Q13508 389 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 DHX34Q14147 1143 aaKnown RBP11.73□□□□□ -0.53
CPSF3-204ENST00000489403 NAA30Q147X3 362 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-204ENST00000489403 NDUFA9Q16795 377 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ABHD17BQ5VST6 288 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ANKRD22Q5VYY1 191 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ARMC3Q5W041 872 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ZNF470Q6ECI4 717 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 CASC4Q6P4E1 433 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ZNF549Q6P9A3 640 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 CYHR1Q6ZMK1 362 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 CAND1Q86VP6 1230 aaKnown RBP11.73□□□□□ -0.53
CPSF3-204ENST00000489403 DENND6AQ8IWF6 608 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 PRELID2Q8N945 189 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 OR9A4Q8NGU2 314 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 SUN3Q8TAQ9 357 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ASB11Q8WXH4 323 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 KCNJ9Q92806 393 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 ZNF669Q96BR6 464 aaPredicted RBP11.73□□□□□ -0.53
CPSF3-204ENST00000489403 PRAP1Q96NZ9 151 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 KLHL42Q9P2K6 505 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 SEC14L3Q9UDX4 400 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 VPS9D1Q9Y2B5 631 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 CSMD2Q7Z408 3487 aa11.73□□□□□ -0.53
CPSF3-204ENST00000489403 MYO7BQ6PIF6 2116 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 SCN2AQ99250 2005 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.72□□□□□ -0.53
CPSF3-204ENST00000489403 ZCWPW2A0A1B0GU75 182 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 CTAGE9A4FU28 777 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 GFYI3L273 518 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 WISP2O76076 250 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 NSA2O95478 260 aaKnown RBP11.72□□□□□ -0.53
CPSF3-204ENST00000489403 ENO3P13929 434 aaPredicted RBP11.72□□□□□ -0.53
CPSF3-204ENST00000489403 IL1RNP18510 177 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 SLC1A2P43004 574 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 CA7P43166 264 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 MAGEA6P43360 314 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 PMP22Q01453 160 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 CTBP1Q13363 440 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 THEMIS2Q5TEJ8 643 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 MFSD4BQ5TF39 518 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 TMEM207Q6UWW9 146 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 VN1R4Q7Z5H5 301 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 CPEB2Q7Z5Q1 589 aaKnown RBP11.72□□□□□ -0.53
CPSF3-204ENST00000489403 MCEMP1Q8IX19 187 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 CPNE9Q8IYJ1 553 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 DNAJB8Q8NHS0 232 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 CD200R1Q8TD46 325 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 METTL21AQ8WXB1 218 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 CYTH2Q99418 400 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 EBNA1BP2Q99848 306 aaKnown RBP11.72□□□□□ -0.53
CPSF3-204ENST00000489403 STMN3Q9NZ72 180 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 SAMD15Q9P1V8 674 aa11.72□□□□□ -0.53
CPSF3-204ENST00000489403 SUCOQ9UBS9 1254 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms