RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ASIC5Q9NY37 505 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 PTTG2Q9NZH5 202 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 BCAP29Q9UHQ4 241 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 PNMA8BQ9ULN7 279 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 SNX6Q9UNH7 406 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 CEPT1Q9Y6K0 416 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 DNMT3AQ9Y6K1 912 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 FAM234BA2RU67 622 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 FOXD2O60548 495 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 UGDHO60701 494 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 NEK2P51955 445 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 POLR2JP52435 117 aaKnown RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 SFSWAPQ12872 951 aaKnown RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 KIAA0040Q15053 153 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 LIPJQ5W064 366 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 UNC5DQ6UXZ4 953 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 ZBTB49Q6ZSB9 765 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 CBR4Q8N4T8 237 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 SELENOMQ8WWX9 145 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 ROPN1LQ96C74 230 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 ZNF597Q96LX8 424 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 PHPT1Q9NRX4 125 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-230ENST00000488543 OLAHQ9NV23 265 aa11.74□□□□□ -0.53
HDAC6-230ENST00000488543 TTC28Q96AY4 2481 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 IGHV1OR15-9A0A0B4J2B8 117 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 A0A1W2PP18 115 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 NPIPB8E9PQR5 432 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 KMOO15229 486 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 IGLV3-19P01714 112 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 CAPNS1P04632 268 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 MYCLP1P12525 358 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-230ENST00000488543 HNRNPA2B1P22626 353 aaKnown RBP11.73□□□□□ -0.53
HDAC6-230ENST00000488543 PRPH2P23942 346 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 CD6P30203 668 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 GNPDA1P46926 289 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 TBPL1P62380 186 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 ZXDAP98168 799 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 IRF8Q02556 426 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 DMWDQ09019 674 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 DOC2AQ14183 400 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 E2F2Q14209 437 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 MAP7Q14244 749 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 IMPG1Q17R60 797 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 RABL3Q5HYI8 236 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 METRNLQ641Q3 311 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 KRT80Q6KB66 452 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 TSSK4Q6SA08 328 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 MAMSTRQ6ZN01 415 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 CARM1Q86X55 608 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 OFCC1Q8IZS5 231 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 TRIML2Q8N7C3 387 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 MAGEB10Q96LZ2 347 aaPredicted RBP11.73□□□□□ -0.53
HDAC6-230ENST00000488543 TMEM74Q96NL1 305 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 SGPP1Q9BX95 441 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 C1QTNF7Q9BXJ2 289 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 EPB41L1Q9H4G0 881 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 FGF22Q9HCT0 170 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 C1orf109Q9NX04 203 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 CMTM6Q9NX76 183 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 SLAMF8Q9P0V8 285 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 SH2B3Q9UQQ2 575 aa11.73□□□□□ -0.53
HDAC6-230ENST00000488543 GPR89AB7ZAQ6 455 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 ANGPT2O15123 496 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 EEDO75530 441 aaKnown RBP11.72□□□□□ -0.53
HDAC6-230ENST00000488543 GPR89BP0CG08 455 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 MAOBP27338 520 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 SLC7A1P30825 629 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 KCNK10P57789 538 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 PLIN5Q00G26 463 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 XKR6Q5GH73 641 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 PAGE3Q5JUK9 113 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 TBCELQ5QJ74 424 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 FRG2Q64ET8 278 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 GRHL2Q6ISB3 625 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 SUSD1Q6UWL2 747 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 GCNT7Q6ZNI0 430 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 RD3Q7Z3Z2 195 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 ZBTB46Q86UZ6 589 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 RNF175Q8N4F7 328 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 PCYOX1LQ8NBM8 494 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 OR5AR1Q8NGP9 310 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 DNAJB14Q8TBM8 379 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 WDR20Q8TBZ3 569 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 ASB12Q8WXK4 309 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 SNX19Q92543 992 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 FBXL20Q96IG2 436 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 FRG2BQ96QU4 278 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 UHRF1Q96T88 793 aaPredicted RBP11.72□□□□□ -0.53
HDAC6-230ENST00000488543 ELOVL6Q9H5J4 265 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 DMTF1Q9Y222 760 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 CFAP20Q9Y6A4 193 aaKnown RBP11.72□□□□□ -0.53
HDAC6-230ENST00000488543 TECTAO75443 2155 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 KLHL33A6NCF5 533 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 C10orf142B7Z368 130 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 FPGTO14772 594 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 ACP5P13686 325 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 CDH2P19022 906 aaPredicted RBP11.72□□□□□ -0.53
HDAC6-230ENST00000488543 JAK1P23458 1154 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 DMPKQ09013 629 aa11.72□□□□□ -0.53
HDAC6-230ENST00000488543 USP39Q53GS9 565 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms