RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 GEMIN8Q9NWZ8 242 aaKnown RBP16.39■□□□□ 0.21
VIM-205ENST00000485947 ASF1AQ9Y294 204 aa16.39■□□□□ 0.21
VIM-205ENST00000485947 PCDHB3Q9Y5E6 796 aa16.39■□□□□ 0.21
VIM-205ENST00000485947 B8ZZF3 427 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 NPHS1O60500 1241 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 CATP04040 527 aaKnown RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 VIMP08670 466 aaKnown RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 HIST1H2AGP0C0S8 130 aaPredicted RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 POLR2CP19387 275 aaPredicted RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 HIST1H2ADP20671 130 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 IMPDH1P20839 514 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 CDH3P22223 829 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 PRDX3P30048 256 aaKnown RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 CCR10P46092 362 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 ALDH18A1P54886 795 aaKnown RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 UNC5DQ6UXZ4 953 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 LURAP1LQ8IV03 231 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 PTGR2Q8N8N7 351 aaPredicted RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 GALNT6Q8NCL4 622 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 MCOLN3Q8TDD5 553 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 EXT2Q93063 718 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 ZNF501Q96CX3 271 aaPredicted RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 HIST1H2AHQ96KK5 128 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 HIST1H2AJQ99878 128 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 H2AFJQ9BTM1 129 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 TWSG1Q9GZX9 223 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 PARVBQ9HBI1 364 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 THAP1Q9NVV9 213 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 CD274Q9NZQ7 290 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 LNPEPQ9UIQ6 1025 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 TSR3Q9UJK0 312 aaKnown RBP16.38■□□□□ 0.21
VIM-205ENST00000485947 ADAMTS6Q9UKP5 1117 aa16.38■□□□□ 0.21
VIM-205ENST00000485947 UNC79Q9P2D8 2635 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 TERTO14746 1132 aaKnown RBP16.37■□□□□ 0.21
VIM-205ENST00000485947 CPNE3O75131 537 aaKnown RBP16.37■□□□□ 0.21
VIM-205ENST00000485947 SNNO75324 88 aaPredicted RBP16.37■□□□□ 0.21
VIM-205ENST00000485947 ANXA5P08758 320 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 EBLN1P0CF75 366 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 ZNF28P17035 718 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 TCN2P20062 427 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 DLSTP36957 453 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 GABPB1Q06547 395 aaPredicted RBP16.37■□□□□ 0.21
VIM-205ENST00000485947 BST1Q10588 318 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 CDC20Q12834 499 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 SETDB1Q15047 1291 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 SULT1C3Q6IMI6 304 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 PWWP2BQ6NUJ5 590 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 METTL2BQ6P1Q9 378 aaKnown RBP16.37■□□□□ 0.21
VIM-205ENST00000485947 TTC23LQ6PF05 361 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 ADGRF3Q8IZF5 1079 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 TCAIMQ8N3R3 496 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 EXD3Q8N9H8 876 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 MAGEC3Q8TD91 643 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 STARD8Q92502 1023 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 PHF21BQ96EK2 531 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 C7orf26Q96N11 449 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 TRMOQ9BU70 441 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 GATA5Q9BWX5 397 aaPredicted RBP16.37■□□□□ 0.21
VIM-205ENST00000485947 C1QTNF3Q9BXJ4 246 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 LHX9Q9NQ69 397 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 STARD5Q9NSY2 213 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 SOHLH2Q9NX45 425 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 PDE10AQ9Y233 779 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 TNPO3Q9Y5L0 923 aaKnown RBP16.37■□□□□ 0.21
VIM-205ENST00000485947 ANKRD12Q6UB98 2062 aa16.37■□□□□ 0.21
VIM-205ENST00000485947 GSAPA4D1B5 854 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 BTN3A3O00478 584 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 EDF1O60869 148 aaKnown RBP16.36■□□□□ 0.21
VIM-205ENST00000485947 SLC1A6P48664 564 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 NAGLUP54802 743 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 ABCE1P61221 599 aaKnown RBP16.36■□□□□ 0.21
VIM-205ENST00000485947 HERVK_113P63132 956 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 OCRLQ01968 901 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 ABRQ12979 859 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 RCN2Q14257 317 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 PHKG1Q16816 387 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 PFKFB4Q16877 469 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 CFAP157Q5JU67 520 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 ZNF678Q5SXM1 525 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 ZCCHC23Q6ZST2 131 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 LRRC34Q8IZ02 419 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 PHC3Q8NDX5 983 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 UBTD2Q8WUN7 234 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 DLG3Q92796 817 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 CNDP1Q96KN2 507 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 TMEM237Q96Q45 408 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 ERVK-6Q9BXR3 956 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 DRC3Q9H069 523 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 SERTAD3Q9UJW9 196 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 CROTQ9UKG9 612 aa16.36■□□□□ 0.21
VIM-205ENST00000485947 PIPSLA2A3N6 862 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 SLC9B1P1A6NJY1 282 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 FKBP9O95302 570 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 KLK3P07288 261 aaPredicted RBP16.35■□□□□ 0.21
VIM-205ENST00000485947 RPS17P08708 135 aaKnown RBP16.35■□□□□ 0.21
VIM-205ENST00000485947 HBQ1P09105 142 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 HNMTP50135 292 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 SEC24CP53992 1094 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 CYP4F2P78329 520 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 GALNT1Q10472 559 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms