RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TRAPPC9Q96Q05 1148 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 SPNS1Q9H2V7 528 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 TMEM9Q9P0T7 183 aa17.35■□□□□ 0.37
SDC1-203ENST00000403076 COL5A1P20908 1838 aaPredicted RBP17.35■□□□□ 0.37
SDC1-203ENST00000403076 LAMA1P25391 3075 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 KCNE1BA0A087WTH5 132 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 A8MU76 341 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 SLCO1B7G3V0H7 640 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 MANBAO00462 879 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 ULK1O75385 1050 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 SKAP2O75563 359 aaPredicted RBP17.34■□□□□ 0.37
SDC1-203ENST00000403076 C9P02748 559 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 TROVE2P10155 538 aaKnown RBP eCLIP17.34■□□□□ 0.37
SDC1-203ENST00000403076 HOXB3P14651 431 aaPredicted RBP17.34■□□□□ 0.37
SDC1-203ENST00000403076 DDX39BQ13838 428 aaKnown RBP17.34■□□□□ 0.37
SDC1-203ENST00000403076 SPIDRQ14159 915 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 E2F2Q14209 437 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 TRIP6Q15654 476 aaKnown RBP17.34■□□□□ 0.37
SDC1-203ENST00000403076 CLPPQ16740 277 aaPredicted RBP17.34■□□□□ 0.37
SDC1-203ENST00000403076 TCHHL1Q5QJ38 904 aaPredicted RBP17.34■□□□□ 0.37
SDC1-203ENST00000403076 FAM219BQ5XKK7 198 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 FCRL6Q6DN72 434 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 ZNF425Q6IV72 752 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 HOMEZQ8IX15 550 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 DDIASQ8IXT1 998 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 DEFB124Q8NES8 71 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 THOC1Q96FV9 657 aaKnown RBP17.34■□□□□ 0.37
SDC1-203ENST00000403076 TRIM55Q9BYV6 548 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 SOHLH2Q9NX45 425 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 VTI1BQ9UEU0 232 aa17.34■□□□□ 0.37
SDC1-203ENST00000403076 MN1Q10571 1320 aaPredicted RBP17.34■□□□□ 0.37
SDC1-203ENST00000403076 TRBC2A0A5B9 178 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 OR2A25A4D2G3 310 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 ANKDD1BA6NHY2 528 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 SRRM3A6NNA2 597 aaPredicted RBP17.33■□□□□ 0.37
SDC1-203ENST00000403076 H0YIV9 168 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 HAT1O14929 419 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 PRAMEF10O60809 474 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 SHOX2O60902 331 aaPredicted RBP17.33■□□□□ 0.37
SDC1-203ENST00000403076 SEPHS1P49903 392 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 NEK2P51955 445 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 PDCD2Q16342 344 aaPredicted RBP17.33■□□□□ 0.37
SDC1-203ENST00000403076 FRG2Q64ET8 278 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 SCIMPQ6UWF3 145 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 C19orf47Q8N9M1 422 aaKnown RBP17.33■□□□□ 0.37
SDC1-203ENST00000403076 OR7G3Q8NG95 312 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 WDR48Q8TAF3 677 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 NETO1Q8TDF5 533 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 TWIST2Q8WVJ9 160 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 SELENOMQ8WWX9 145 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 FRG2BQ96QU4 278 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 PITHD1Q9GZP4 211 aaPredicted RBP17.33■□□□□ 0.37
SDC1-203ENST00000403076 EPN3Q9H201 632 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 RABEP2Q9H5N1 569 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 NPHS2Q9NP85 383 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 PFDN4Q9NQP4 134 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 ZNF490Q9ULM2 529 aaPredicted RBP17.33■□□□□ 0.37
SDC1-203ENST00000403076 BTRCQ9Y297 605 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 DNAJC15Q9Y5T4 150 aa17.33■□□□□ 0.37
SDC1-203ENST00000403076 IGHV5-51A0A0C4DH38 117 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 A0A0J9YVX5 310 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 HDAC3O15379 428 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 NRP2O60462 931 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 RFPL3O75679 317 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 ZBTB11O95625 1053 aaPredicted RBP17.32■□□□□ 0.36
SDC1-203ENST00000403076 SERPIND1P05546 499 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 EZRP15311 586 aaKnown RBP17.32■□□□□ 0.36
SDC1-203ENST00000403076 HTR6P50406 440 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 HK2P52789 917 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 RPS15AP62244 130 aaKnown RBP17.32■□□□□ 0.36
SDC1-203ENST00000403076 PHEXP78562 749 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 CBX1P83916 185 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 E2F1Q01094 437 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 CYP4F3Q08477 520 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 SF3A3Q12874 501 aaKnown RBP eCLIP17.32■□□□□ 0.36
SDC1-203ENST00000403076 CARFQ8N187 725 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 CHCHD4Q8N4Q1 142 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 OR4D9Q8NGE8 314 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 TCTN2Q96GX1 697 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 PPP1R36Q96LQ0 422 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 NT5DC2Q9H857 520 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 KLK4Q9Y5K2 254 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 USH1CQ9Y6N9 552 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 MYO15AQ9UKN7 3530 aa17.32■□□□□ 0.36
SDC1-203ENST00000403076 SNRNP200O75643 2136 aaKnown RBP17.32■□□□□ 0.36
SDC1-203ENST00000403076 LCMT2O60294 686 aaKnown RBP17.31■□□□□ 0.36
SDC1-203ENST00000403076 TGDSO95455 350 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 PDYNP01213 254 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 DRD4P21917 467 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 MLLT3P42568 568 aaPredicted RBP17.31■□□□□ 0.36
SDC1-203ENST00000403076 SCTRP47872 440 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 ILKQ13418 452 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 ZIC1Q15915 447 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 UGT3A2Q3SY77 523 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 ZNF574Q6ZN55 896 aaPredicted RBP17.31■□□□□ 0.36
SDC1-203ENST00000403076 TMPRSS9Q7Z410 1059 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 PRSS42Q7Z5A4 293 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 LAS2Q8IYD9 372 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 TTLQ8NG68 377 aa17.31■□□□□ 0.36
SDC1-203ENST00000403076 MTERF1Q99551 399 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms