RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 NMT2O60551 498 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CCDC22O60826 627 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 LYPLA2O95372 231 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ENTPD1P49961 510 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SRYQ05066 204 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 GAB1Q13480 694 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 OASLQ15646 514 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 CTC1Q2NKJ3 1217 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 LAPTM4BQ86VI4 370 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 EPHX4Q8IUS5 362 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 RNF31Q96EP0 1072 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CENPNQ96H22 339 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 FCRL4Q96PJ5 515 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ZNF382Q96SR6 550 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 KCNK17Q96T54 332 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MCMBPQ9BTE3 642 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MS4A5Q9H3V2 200 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TM9SF3Q9HD45 589 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TRIM36Q9NQ86 728 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MIOSQ9NXC5 875 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ADA2Q9NZK5 511 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 PCYOX1Q9UHG3 505 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TMEM59LQ9UK28 342 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 EPN1Q9Y6I3 576 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 IQGAP3Q86VI3 1631 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 BCL9LQ86UU0 1499 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ABCA4P78363 2273 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CEP250Q9BV73 2442 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 A0A0G2JMP0 313 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 GGT3PA6NGU5 568 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 STX16-NPEPL1H3BU86 382 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 TRIM77I1YAP6 450 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 BTN3A1O00481 513 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 STX16O14662 325 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SRPX2O60687 465 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 FABP1P07148 127 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 FAHP16930 419 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 DR1Q01658 176 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 AIMP2Q13155 320 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 SLC10A1Q14973 349 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 WHAMMP3Q1A5X7 153 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 MORN1Q5T089 497 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 JMJD6Q6NYC1 403 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 FAM92BQ6ZTR7 304 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 AHSA2Q719I0 299 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 APTXQ7Z2E3 356 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 IQCHQ86VS3 1027 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 FAM228AQ86W67 206 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 MAP4K3Q8IVH8 894 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CHCHD4Q8N4Q1 142 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 STEAP2Q8NFT2 490 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 OR4M2Q8NGB6 313 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 OR52B6Q8NGF0 335 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ZFP90Q8TF47 636 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SLC13A3Q8WWT9 602 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 C11orf40Q8WZ69 217 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 BORCS5Q969J3 196 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 C3orf49Q96BT1 292 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CMTM5Q96DZ9 223 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 PKP4Q99569 1192 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 TMEM120AQ9BXJ8 343 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ACTR6Q9GZN1 396 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 FN3KQ9H479 309 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RAB18Q9NP72 206 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ZNF71Q9NQZ8 489 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 KLHL1Q9NR64 748 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 KCNN3Q9UGI6 736 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RNF24Q9Y225 148 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 ASXL3Q9C0F0 2248 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 A0A0U1RQJ8 604 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 YDJCA8MPS7 323 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 J3KR12 359 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 S1PR4O95977 384 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 AK1P00568 194 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CSF3P09919 207 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CTPS1P17812 591 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 HSD11B1P28845 292 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 PTGS2P35354 604 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 OPRM1P35372 400 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RAP1GAPP47736 663 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CLCNKBP51801 687 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CCNHP51946 323 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 DCAF7P61962 342 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 USP46P62068 366 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SLC18A2Q05940 514 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 PDIA2Q13087 525 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 SQLEQ14534 574 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 WFDC8Q8IUA0 241 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SLC15A3Q8IY34 581 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 CSNK1A1LQ8N752 337 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 PIH1D2Q8WWB5 315 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 RAB8BQ92930 207 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 PSMG2Q969U7 264 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 LIN37Q96GY3 246 aaPredicted RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 TM9SF2Q99805 663 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 TDRD1Q9BXT4 1180 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 CAB39LQ9H9S4 337 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 NLKQ9UBE8 527 aa3.97□□□□□ -1.77
USH2A-202ENST00000366942 SAMD4AQ9UPU9 718 aaKnown RBP3.97□□□□□ -1.77
USH2A-202ENST00000366942 B3GALT5Q9Y2C3 310 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms